Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- plasma membrane 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0239g00110.t01 | |
| VIT_04s0008g02070.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08850.1 | VIT_04s0008g02070.t01 | AT2G26290.1 | 21798944 |
| AT3G08850.1 | VIT_00s0239g00110.t01 | AT5G61960.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043895 | Potato | cytosol | 81.51 | 82.48 |
| Solyc09g014780.2.1 | Tomato | nucleus | 81.66 | 82.26 |
| KRH00387 | Soybean | nucleus | 82.17 | 82.05 |
| KRH40797 | Soybean | nucleus | 82.61 | 82.01 |
| AT3G08850.1 | Thale cress | cytosol | 75.86 | 76.93 |
| Bra001342.1-P | Field mustard | plastid | 74.03 | 74.3 |
| CDY67456 | Canola | plastid | 74.03 | 74.3 |
| CDY00652 | Canola | plastid | 73.88 | 74.15 |
| Bra029726.1-P | Field mustard | cytosol | 73.07 | 74.0 |
| CDY27967 | Canola | cytosol | 73.22 | 72.32 |
| VIT_08s0058g00900.t01 | Wine grape | vacuole | 8.95 | 72.19 |
| AT5G01770.1 | Thale cress | cytosol | 69.7 | 71.11 |
| CDY64943 | Canola | cytosol | 62.29 | 70.81 |
| KRH40804 | Soybean | cytosol | 6.6 | 65.69 |
| Zm00001d005064_P002 | Maize | plastid | 9.46 | 51.81 |
| VIT_08s0058g00910.t01 | Wine grape | cytosol, extracellular, nucleus | 2.64 | 47.37 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100261889 | wikigene:100261889 | Gene3D:2.130.10.10 | MapMan:27.7.1.2 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ProteinID:CBI18073 | ProteinID:CBI18073.3 | UniProt:D7SR28 | EMBL:FN594967 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008361 | GO:GO:0009056 | GO:GO:0009267 | GO:GO:0009605 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0009991 | GO:GO:0010506 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0019538 | GO:GO:0030307 |
| GO:GO:0030674 | GO:GO:0031929 | GO:GO:0031931 | GO:GO:0040007 | GO:GO:0071230 | GO:GO:0071902 |
| InterPro:IPR001680 | InterPro:IPR011989 | InterPro:IPR015943 | InterPro:IPR017986 | EntrezGene:LOC100261889 | wikigene:LOC100261889 |
| PFAM:PF00400 | PFAM:PF13646 | PFAM:PF14538 | PRINTS:PR01547 | PFscan:PS50294 | PANTHER:PTHR12848 |
| PANTHER:PTHR12848:SF16 | InterPro:Raptor | InterPro:Raptor_N | SMART:SM00320 | SMART:SM01302 | SUPFAM:SSF48371 |
| SUPFAM:SSF50978 | TIGR:TC69731 | UniParc:UPI0001BE1407 | ArrayExpress:VIT_08s0058g00890 | EnsemblPlantsGene:VIT_08s0058g00890 | EnsemblPlants:VIT_08s0058g00890.t01 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_003632587 | RefSeq:XP_003632587.1 |
| RefSeq:XP_003632588 | RefSeq:XP_003632588.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:-:10159125..10177168
Molecular Weight (calculated)
149928.0 Da
IEP (calculated)
6.436
GRAVY (calculated)
-0.099
Length
1363 amino acids
Sequence
(BLAST)
(BLAST)
0001: MALGDLMASR FSQSSVAVSN HLDECSSHED GDLNSNRRDR DSDAASSSYT NATATTSMAY FPQNIVLCEL RHEAFEACAP SGPSDSGLVS KWRPKDRMKT
0101: GCVALVLCLN ISVDPPDVIK ISPCARMECW IDPFSMAPQR ALEMIGKNLS AQYERWQPKA RCKYQLDPTV EEVKKLCNSC RKYAKSERVL FHYNGHGVPK
0201: PTANGEIWLF NKSYTQYIPL PISDLDSWLK TPSIYVFDCS AAGMIVNAFI ELHDWNASVS SGSARDCILL AACEAHETLP QSAEFPADVF TSCLTTPIKM
0301: ALRWFCTRSL LRESLDYSLI DKIPGRQNDR KTLLGELNWI FTAVTDTIAW NVLPHDLFQR LFRQDLLVAS LFRNFLLAER IMRSANCSPI SHPMLPPTHQ
0401: HHMWDAWDMA AEICLSQLKS LVDDPNAEFQ PSPFFTEQLT AFEVWLDHGS EHKKPPEQLP IVLQVLLSQC HRFRALVLLG RFLDMGPWAV DLALSVGIFP
0501: YVLKLLQTTT PELRQILVFI WTKILALDKS CQVDLVKDGG HIYFIRFLDS VEAYPEQRAM AAFVLAVIVD GHKRGQEACI RAGLIDVCLK HLQGSIPNDG
0601: QTEPLFLQWL CLCLGKLWED FTDTQIIGLQ AGAPAIYAPL LSLLSEPQPE VRASAVFALG TLLDVGFDST REGTGDEDCD DDDEKIKAEI SVIKSLLNVV
0701: SDGSPLVRAE VAVALGRFAF GHNKHLKSIA AAYWKPQSNL LNSLPSLAHA KGTTNVYTNP NQYMPYGSIV PPVGPLLRVG NDNSVTRDGR VSTSSSPLAN
0801: TGIMHGSPLS DDSSQLSDSG ILNDGVSNGI VNHSRPKPLD NAIYSQCVLA MRALAKDPSP RIASLGRRVL SIIGIEQVVN KPVKSAGTSV RPAEPTLLSP
0901: TPSLIGLARS TSWFDMNGGN LPMTFRTPPV SPPRPSYLTG MRRVYSLEFR PHQLNSPDTG LADPLLGSAG SSGVSERSFL PQSIIYNWSC GHFSKPLLSA
1001: ADDNEEILAR REEREKFALD HISKCQHSSV SKLNNQIASW DTRFEAGAKT ALLQPFSPIV VAADENERIR IWNYDEATLL NSFDNHNFPD KGISKLCLVN
1101: ELDDSLLLVA SCDGNVRIWK DYTLRGQQKL VTAFSSIQGH RPGVRSVNAV VDWQQQSGYL YAAGEISSIM AWDLDKEQLV YSIPSLSDSS ISALSASQVH
1201: GGQLAAGFVD GSVKLFDVRT PEMLVCAARP HTQRVERVVG IGFQPGLDPA KIVSASQAGD IQFLDVRNGN CAYLTIDAHR GSLTALAIHR HAPLIASGSA
1301: KQIIKVFNLE GSQLGTIRFY PTFMAQKIGS VNCLTFHPYQ VLLAAGAADA LVSIYADDNS QAR
0101: GCVALVLCLN ISVDPPDVIK ISPCARMECW IDPFSMAPQR ALEMIGKNLS AQYERWQPKA RCKYQLDPTV EEVKKLCNSC RKYAKSERVL FHYNGHGVPK
0201: PTANGEIWLF NKSYTQYIPL PISDLDSWLK TPSIYVFDCS AAGMIVNAFI ELHDWNASVS SGSARDCILL AACEAHETLP QSAEFPADVF TSCLTTPIKM
0301: ALRWFCTRSL LRESLDYSLI DKIPGRQNDR KTLLGELNWI FTAVTDTIAW NVLPHDLFQR LFRQDLLVAS LFRNFLLAER IMRSANCSPI SHPMLPPTHQ
0401: HHMWDAWDMA AEICLSQLKS LVDDPNAEFQ PSPFFTEQLT AFEVWLDHGS EHKKPPEQLP IVLQVLLSQC HRFRALVLLG RFLDMGPWAV DLALSVGIFP
0501: YVLKLLQTTT PELRQILVFI WTKILALDKS CQVDLVKDGG HIYFIRFLDS VEAYPEQRAM AAFVLAVIVD GHKRGQEACI RAGLIDVCLK HLQGSIPNDG
0601: QTEPLFLQWL CLCLGKLWED FTDTQIIGLQ AGAPAIYAPL LSLLSEPQPE VRASAVFALG TLLDVGFDST REGTGDEDCD DDDEKIKAEI SVIKSLLNVV
0701: SDGSPLVRAE VAVALGRFAF GHNKHLKSIA AAYWKPQSNL LNSLPSLAHA KGTTNVYTNP NQYMPYGSIV PPVGPLLRVG NDNSVTRDGR VSTSSSPLAN
0801: TGIMHGSPLS DDSSQLSDSG ILNDGVSNGI VNHSRPKPLD NAIYSQCVLA MRALAKDPSP RIASLGRRVL SIIGIEQVVN KPVKSAGTSV RPAEPTLLSP
0901: TPSLIGLARS TSWFDMNGGN LPMTFRTPPV SPPRPSYLTG MRRVYSLEFR PHQLNSPDTG LADPLLGSAG SSGVSERSFL PQSIIYNWSC GHFSKPLLSA
1001: ADDNEEILAR REEREKFALD HISKCQHSSV SKLNNQIASW DTRFEAGAKT ALLQPFSPIV VAADENERIR IWNYDEATLL NSFDNHNFPD KGISKLCLVN
1101: ELDDSLLLVA SCDGNVRIWK DYTLRGQQKL VTAFSSIQGH RPGVRSVNAV VDWQQQSGYL YAAGEISSIM AWDLDKEQLV YSIPSLSDSS ISALSASQVH
1201: GGQLAAGFVD GSVKLFDVRT PEMLVCAARP HTQRVERVVG IGFQPGLDPA KIVSASQAGD IQFLDVRNGN CAYLTIDAHR GSLTALAIHR HAPLIASGSA
1301: KQIIKVFNLE GSQLGTIRFY PTFMAQKIGS VNCLTFHPYQ VLLAAGAADA LVSIYADDNS QAR
0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
Arabidopsis Description
RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.