Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400033828 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08850.1 | PGSC0003DMT400033828 | AT2G26290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g014780.2.1 | Tomato | nucleus | 98.37 | 97.93 |
| VIT_08s0058g00890.t01 | Wine grape | cytosol | 82.48 | 81.51 |
| KRH40797 | Soybean | nucleus | 80.77 | 79.24 |
| KRH00387 | Soybean | nucleus | 80.03 | 78.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.16 | 77.02 |
| AT3G08850.1 | Thale cress | cytosol | 74.83 | 75.0 |
| Bra001342.1-P | Field mustard | plastid | 73.57 | 72.97 |
| CDY67456 | Canola | plastid | 73.57 | 72.97 |
| CDY00652 | Canola | plastid | 73.5 | 72.9 |
| GSMUA_Achr5P14390_001 | Banana | cytosol | 74.68 | 72.22 |
| Bra029726.1-P | Field mustard | cytosol | 72.09 | 72.14 |
| Os11t0109933-01 | Rice | cytosol | 64.37 | 71.18 |
| CDY27967 | Canola | cytosol | 72.16 | 70.43 |
| AT5G01770.1 | Thale cress | cytosol | 69.27 | 69.84 |
| TraesCS5B01G147900.4 | Wheat | plastid | 70.23 | 69.35 |
| TraesCS5D01G143600.3 | Wheat | plastid | 70.23 | 69.35 |
| TraesCS5A01G149200.2 | Wheat | plastid | 70.23 | 69.3 |
| CDY64943 | Canola | cytosol | 61.47 | 69.06 |
| Os12t0110000-01 | Rice | cytosol, plastid | 69.41 | 68.8 |
| OQU82706 | Sorghum | cytosol, plastid | 68.3 | 68.2 |
| EES16504 | Sorghum | plastid | 68.0 | 66.96 |
| KRH40804 | Soybean | cytosol | 6.53 | 64.23 |
| Zm00001d005064_P002 | Maize | plastid | 9.43 | 51.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 6.83 | 43.6 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:2.130.10.10 | MapMan:27.7.1.2 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0031929 | GO:GO:0031931 | InterPro:IPR001680 |
| InterPro:IPR011989 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1BFB5 | PFAM:PF14538 | EnsemblPlantsGene:PGSC0003DMG400017035 |
| PGSC:PGSC0003DMG400017035 | EnsemblPlants:PGSC0003DMT400043895 | PRINTS:PR01547 | PFscan:PS50294 | PANTHER:PTHR12848 | PANTHER:PTHR12848:SF16 |
| InterPro:Raptor | InterPro:Raptor_N | SMART:SM00320 | SMART:SM01302 | SUPFAM:SSF48371 | SUPFAM:SSF50978 |
| UniParc:UPI000295B1E6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
RAPTOR1B [Source:PGSC_GENE;Acc:PGSC0003DMG400017035]
Coordinates
chr9:-:12790537..12807974
Molecular Weight (calculated)
148120.0 Da
IEP (calculated)
6.372
GRAVY (calculated)
-0.089
Length
1347 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASRFSQSSA ALDEFGNEDG ERNNVRDLDT ASSSYVGGGV ADNAMTTTSM AYFPQTIVLC ELRHDRFEDS VPSGPSDTGL VSKWRPRDRM KTGCVALVLC
0101: LNISVDPPDV IKISPCARME CWVDPFSMAP QKALETIGRT LNQQYERWQP RAKYKISLDP TVDEIKKLCT TCRKYAKSER VLFHYNGHGV PKPTANGEIW
0201: LFNKSYTQYI PLPISDLDSW LKTPSIYVFD CSAAGMIVNA FIELQDWTAS GSSATSTRDS ILLAACEAHE TLPQSAEFPA DVFTSCLTTP IKMALRWFCT
0301: RSLLHESLDY SLIDRIPGRQ TDRKTLLGEL NWIFTAVTDT IAWNVLPHDL FQRLFRQDLL VASLFRNFLL AERIMRSANC SPISYPMLPP THQHHMWDAW
0401: DMAAEICLSQ LPNLVEDPNA EFQPSPFFTE QLTAFEVWLD HGSKDKKPPE QLPIVLQVLL SQCHRFRALV LLGRFLDMGP WAVDLALSVG IFPYVLKLLQ
0501: TTTPDLRQIL VFIWTKILAL DKSCQVDLVK DGGHTYFIRF LDSVEAYPEQ RAMAAFVLAV IVDGHRRGQE ACFEAALIHV CLKHLQGSTP NEAQTEPLFL
0601: QWLCLCLGKL WEDFTEAQVQ GLQADAPAIF APLLSEPQPE VRAAATFALG TLLDVGFDSA RDGVGGDEDC DDEEKVRTEV SIIKSLLSVA SDGSPLVRVE
0701: VAVALARFAF GHNKHLKSVA AAYWKPQANS LLTSLPSFAV KSSGSGYTTP THSISHGSRV PSPIAPLLRV GGDSQSISRD GRVSTSSPLA TPGVIHGSPL
0801: SDDSSQLSDP GILNDAVTNG VVNHTRSRPL DNALYSQCVL AMCALAKDPS PRIAGLGRRV LSIIGIEQVV AKSVKSTGES TTVPNTGYAG LARSSSWFDM
0901: NGGHLPLTFR TPPVSPPRPS YLTGMRRVCS LEFRPHLMHS QDSGLADPLL GSAGSSGPSE RSFLPQPTIY NWSCGHFSKP LLTAADDSEE MVARREEKEK
1001: LALDLIAKCQ HSSVSKLHNQ IASWDTKFEI GTKTALLQPF SPIVIAADES ERIRVWNYEE ATLLNSFDNH SYPDKGISKL CLVNELDESL LLVASSDGNI
1101: RIWKDYTLRG RQRLVSAFSS IQGHRPGVRS VNAVVDWQQQ SGYLFSSGEV SSIMAWDLDK EQLVNTIPTS SDCSISALSA SQVHAGHFAA GFVDGCVKLF
1201: DIRMPELLVC ASRPHTQRVE RVVGIGFQPG LEPAKIVSAS QAGDIQFLDM RNLKEAYLTI DAHRGSLTAL AVHRHAPLIA SGSAKQLIKV FNLEGEQLGT
1301: IRYLSTFMAQ KIGSVRCLTF HPYQVLLAAG AADSCVSIYA DEIAPTR
0101: LNISVDPPDV IKISPCARME CWVDPFSMAP QKALETIGRT LNQQYERWQP RAKYKISLDP TVDEIKKLCT TCRKYAKSER VLFHYNGHGV PKPTANGEIW
0201: LFNKSYTQYI PLPISDLDSW LKTPSIYVFD CSAAGMIVNA FIELQDWTAS GSSATSTRDS ILLAACEAHE TLPQSAEFPA DVFTSCLTTP IKMALRWFCT
0301: RSLLHESLDY SLIDRIPGRQ TDRKTLLGEL NWIFTAVTDT IAWNVLPHDL FQRLFRQDLL VASLFRNFLL AERIMRSANC SPISYPMLPP THQHHMWDAW
0401: DMAAEICLSQ LPNLVEDPNA EFQPSPFFTE QLTAFEVWLD HGSKDKKPPE QLPIVLQVLL SQCHRFRALV LLGRFLDMGP WAVDLALSVG IFPYVLKLLQ
0501: TTTPDLRQIL VFIWTKILAL DKSCQVDLVK DGGHTYFIRF LDSVEAYPEQ RAMAAFVLAV IVDGHRRGQE ACFEAALIHV CLKHLQGSTP NEAQTEPLFL
0601: QWLCLCLGKL WEDFTEAQVQ GLQADAPAIF APLLSEPQPE VRAAATFALG TLLDVGFDSA RDGVGGDEDC DDEEKVRTEV SIIKSLLSVA SDGSPLVRVE
0701: VAVALARFAF GHNKHLKSVA AAYWKPQANS LLTSLPSFAV KSSGSGYTTP THSISHGSRV PSPIAPLLRV GGDSQSISRD GRVSTSSPLA TPGVIHGSPL
0801: SDDSSQLSDP GILNDAVTNG VVNHTRSRPL DNALYSQCVL AMCALAKDPS PRIAGLGRRV LSIIGIEQVV AKSVKSTGES TTVPNTGYAG LARSSSWFDM
0901: NGGHLPLTFR TPPVSPPRPS YLTGMRRVCS LEFRPHLMHS QDSGLADPLL GSAGSSGPSE RSFLPQPTIY NWSCGHFSKP LLTAADDSEE MVARREEKEK
1001: LALDLIAKCQ HSSVSKLHNQ IASWDTKFEI GTKTALLQPF SPIVIAADES ERIRVWNYEE ATLLNSFDNH SYPDKGISKL CLVNELDESL LLVASSDGNI
1101: RIWKDYTLRG RQRLVSAFSS IQGHRPGVRS VNAVVDWQQQ SGYLFSSGEV SSIMAWDLDK EQLVNTIPTS SDCSISALSA SQVHAGHFAA GFVDGCVKLF
1201: DIRMPELLVC ASRPHTQRVE RVVGIGFQPG LEPAKIVSAS QAGDIQFLDM RNLKEAYLTI DAHRGSLTAL AVHRHAPLIA SGSAKQLIKV FNLEGEQLGT
1301: IRYLSTFMAQ KIGSVRCLTF HPYQVLLAAG AADSCVSIYA DEIAPTR
0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
Arabidopsis Description
RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.