Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005064_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | Zm00001d005064_P002 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77194 | Sorghum | plastid | 78.06 | 90.46 |
| Os05t0102800-01 | Rice | nucleus | 68.57 | 68.06 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 40.51 | 64.76 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 63.08 | 63.89 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 62.76 | 63.37 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 62.66 | 61.3 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.33 | 54.55 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 43.57 | 41.72 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 43.35 | 41.18 |
| Zm00001d016606_P022 | Maize | nucleus | 44.62 | 41.11 |
| CDY30686 | Canola | nucleus | 22.57 | 40.38 |
| Zm00001d050584_P034 | Maize | endoplasmic reticulum, nucleus | 43.99 | 39.56 |
| Zm00001d025278_P025 | Maize | nucleus | 41.24 | 39.26 |
| Zm00001d008781_P003 | Maize | nucleus | 7.7 | 39.04 |
| PGSC0003DMT400005752 | Potato | nucleus | 40.08 | 38.93 |
| Solyc05g023740.2.1 | Tomato | nucleus | 39.45 | 38.48 |
| KRH59735 | Soybean | nucleus | 37.87 | 37.87 |
| KRH45198 | Soybean | nucleus | 29.32 | 37.67 |
| CDY30687 | Canola | nucleus | 33.97 | 37.66 |
| CDX98985 | Canola | nucleus | 34.92 | 37.4 |
| Bra029297.1-P | Field mustard | nucleus | 35.13 | 37.33 |
| Bra009274.1-P | Field mustard | nucleus | 34.81 | 37.29 |
| CDX70025 | Canola | nucleus | 34.81 | 37.16 |
| AT5G07290.1 | Thale cress | nucleus | 35.44 | 37.05 |
| KRH41056 | Soybean | nucleus | 37.24 | 37.0 |
| AT5G61960.1 | Thale cress | nucleus | 35.23 | 36.5 |
| Bra010044.1-P | Field mustard | nucleus | 35.23 | 36.46 |
| KRH63864 | Soybean | nucleus | 36.92 | 36.05 |
| CDX86947 | Canola | nucleus | 34.28 | 35.75 |
| CDY00238 | Canola | nucleus | 34.18 | 35.45 |
| KRH54096 | Soybean | nucleus | 36.08 | 35.37 |
| Zm00001d048798_P001 | Maize | nucleus | 11.92 | 34.04 |
| Zm00001d031675_P001 | Maize | nucleus | 5.27 | 34.01 |
| Zm00001d045611_P001 | Maize | nucleus | 29.22 | 32.7 |
| Zm00001d007808_P002 | Maize | nucleus | 12.24 | 32.58 |
| Zm00001d035869_P017 | Maize | golgi | 28.69 | 31.89 |
| Zm00001d013726_P001 | Maize | nucleus | 7.59 | 31.17 |
| CDY72437 | Canola | nucleus | 6.96 | 26.29 |
| Zm00001d008437_P001 | Maize | mitochondrion, nucleus, plastid | 8.23 | 23.28 |
| Zm00001d042445_P001 | Maize | nucleus | 14.35 | 20.48 |
| Zm00001d006207_P001 | Maize | plastid | 6.65 | 18.86 |
| Zm00001d053860_P001 | Maize | plastid | 6.22 | 16.91 |
Protein Annotations
| EntrezGene:100383420 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6LIK7 | ProteinID:AQK79629.1 | ProteinID:AQK79636.1 |
| ProteinID:AQK79640.1 | ProteinID:AQK79648.1 | InterPro:DNA/RNA_endonuclease_AS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0016787 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| ScanProsite:PS01070 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842FE9F | EnsemblPlantsGene:Zm00001d035763 | EnsemblPlants:Zm00001d035763_P003 | EnsemblPlants:Zm00001d035763_T003 |
| SEG:seg | : | : | : | : | : |
Description
Protein MEI2-like 1
Coordinates
chr6:+:46340883..46349622
Molecular Weight (calculated)
103843.0 Da
IEP (calculated)
6.661
GRAVY (calculated)
-0.601
Length
948 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIASGAVDR GHLSPIAPLS ESPSSSSFFS QDLVPTERQV GFWKSSESMV DHKGSKPIFT SPLDKAHPIG SSPAGGLEHQ RGQAFKGKLG MLNLGNLVDQ
101: QENAPGIPSI SWGDVLSTSR SSLGLSTGGT AFVEPPSADQ HVQDYGDCFS SSSFTEVFGR KSARLMASGV YGQSAGANDS GYDGDEPLGS MKEMEAQTIG
201: DLLPDDDDLM SGIIDGFEYT GLSNQDDADE DIFYTGGGLE LEHDDSNNVD KFRDVSFKIQ LSEKHSIDKH HSRALIVKNI NPGIEGSDLR ALFQQYGDVQ
301: TFDTSCKSHG IVTVSYYDIR AAQDAVRAVH NKPLGLMKLD VQFSLPKENV PNKDPNNGTL VVSLIDSSIS SHDLLQKFSV YGDVKEIYKS PTSCNKKFVE
401: FYDIRAAQEA LNDLNKGEIS CSQIKVEHSF SGGAGSCFAE QYSGEQKQNA VAHQLKNSPP GTIGKLDTKS WDSSTVHNLY SPVRPQHDKS QHGFSVNPPQ
501: KLSSPIRIES TQQHSNQTAF GEHSGSLGHG NFGGGLQAFH PHSLPECHNG ICNGYNSMTL NARNSNFRFT EGIDYNNHKV DHSDLHGHSS DQNEAIRVAG
601: IGSCPLHGHH YTWSNSNGFP QSPSAPMMWP NFQQPVHMHC YPAMPPHIRR SAAHPMDQHH LGSAPNSVGG FANAHSFHPG SLESVGFPGS PQLYPSDLSV
701: FASARGNYRE TMFSAISAGF PSIQQILHAT NGRNPMMHVS TSYDATNDRI RSRRHDGNAA QSENKKQFEL DLDRIAKGED SRTTLMIKNI PNKLIVDAIN
801: RYTSKLLLAV IDENHRGTYD FIYLPIDFKN KCNVGYAFIN MTDPQQIVPF YKTFNGKKWE KFNSEKVASL AYARIQGRNA LIAHFQNSSL MNEEKWCRPM
901: LFHKDGPNAG DQEPFPVGNN VRSRSGRNRP LSSGSETTKE ASPSTSPN
101: QENAPGIPSI SWGDVLSTSR SSLGLSTGGT AFVEPPSADQ HVQDYGDCFS SSSFTEVFGR KSARLMASGV YGQSAGANDS GYDGDEPLGS MKEMEAQTIG
201: DLLPDDDDLM SGIIDGFEYT GLSNQDDADE DIFYTGGGLE LEHDDSNNVD KFRDVSFKIQ LSEKHSIDKH HSRALIVKNI NPGIEGSDLR ALFQQYGDVQ
301: TFDTSCKSHG IVTVSYYDIR AAQDAVRAVH NKPLGLMKLD VQFSLPKENV PNKDPNNGTL VVSLIDSSIS SHDLLQKFSV YGDVKEIYKS PTSCNKKFVE
401: FYDIRAAQEA LNDLNKGEIS CSQIKVEHSF SGGAGSCFAE QYSGEQKQNA VAHQLKNSPP GTIGKLDTKS WDSSTVHNLY SPVRPQHDKS QHGFSVNPPQ
501: KLSSPIRIES TQQHSNQTAF GEHSGSLGHG NFGGGLQAFH PHSLPECHNG ICNGYNSMTL NARNSNFRFT EGIDYNNHKV DHSDLHGHSS DQNEAIRVAG
601: IGSCPLHGHH YTWSNSNGFP QSPSAPMMWP NFQQPVHMHC YPAMPPHIRR SAAHPMDQHH LGSAPNSVGG FANAHSFHPG SLESVGFPGS PQLYPSDLSV
701: FASARGNYRE TMFSAISAGF PSIQQILHAT NGRNPMMHVS TSYDATNDRI RSRRHDGNAA QSENKKQFEL DLDRIAKGED SRTTLMIKNI PNKLIVDAIN
801: RYTSKLLLAV IDENHRGTYD FIYLPIDFKN KCNVGYAFIN MTDPQQIVPF YKTFNGKKWE KFNSEKVASL AYARIQGRNA LIAHFQNSSL MNEEKWCRPM
901: LFHKDGPNAG DQEPFPVGNN VRSRSGRNRP LSSGSETTKE ASPSTSPN
001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
Arabidopsis Description
ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.