Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | CDY00652 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY27967 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY64943 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY67456 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010044.1-P | Field mustard | nucleus | 97.47 | 96.72 |
| CDY00238 | Canola | nucleus | 97.25 | 96.72 |
| CDY30687 | Canola | nucleus | 82.18 | 87.37 |
| CDY30686 | Canola | nucleus | 50.38 | 86.42 |
| CDY71762 | Canola | nucleus | 22.66 | 85.83 |
| AT5G61960.1 | Thale cress | nucleus | 85.26 | 84.7 |
| CDY72437 | Canola | nucleus | 22.55 | 81.67 |
| CDX98985 | Canola | nucleus | 68.43 | 70.28 |
| CDX70025 | Canola | nucleus | 68.32 | 69.93 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.27 | 51.82 |
| KRH59735 | Soybean | nucleus | 45.43 | 43.57 |
| KRH41056 | Soybean | nucleus | 45.54 | 43.4 |
| KRH63864 | Soybean | nucleus | 45.32 | 42.43 |
| KRH54096 | Soybean | nucleus | 44.44 | 41.78 |
| CDX78826 | Canola | nucleus | 27.5 | 37.59 |
| CDX94663 | Canola | nucleus | 30.47 | 37.58 |
| CDY48336 | Canola | nucleus | 31.9 | 37.52 |
| CDY15631 | Canola | nucleus | 30.25 | 37.36 |
| CDX99820 | Canola | nucleus | 32.23 | 36.99 |
| CDY61671 | Canola | nucleus | 26.84 | 36.75 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 23.76 | 36.42 |
| Os05t0102800-01 | Rice | nucleus | 37.62 | 35.81 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 35.86 | 34.83 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 35.75 | 34.61 |
| Zm00001d035763_P003 | Maize | plastid | 35.75 | 34.28 |
| CDX83512 | Canola | nucleus | 28.6 | 33.04 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 35.09 | 32.92 |
| CDY42812 | Canola | nucleus | 28.71 | 32.91 |
| OQU77194 | Sorghum | plastid | 29.04 | 32.27 |
| CDX79841 | Canola | nucleus | 27.06 | 31.74 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 27.94 | 31.44 |
| CDY42813 | Canola | nucleus | 28.05 | 31.21 |
| CDY01848 | Canola | plastid | 12.1 | 21.91 |
| CDY56219 | Canola | plastid | 11.77 | 20.34 |
| CDY14020 | Canola | plastid | 6.16 | 20.0 |
| CDX83589 | Canola | nucleus | 12.43 | 19.45 |
| CDY40990 | Canola | nucleus | 12.76 | 18.95 |
| CDY13612 | Canola | nucleus | 12.65 | 18.91 |
| CDY40768 | Canola | nucleus | 6.27 | 18.87 |
| CDX99727 | Canola | nucleus | 12.32 | 18.57 |
| CDY62093 | Canola | nucleus, plastid | 4.4 | 16.0 |
| CDY44647 | Canola | nucleus, plastid | 4.07 | 15.48 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078DCZ4 | EnsemblPlants:CDX86947 | ProteinID:CDX86947 | ProteinID:CDX86947.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00145765001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EE2F11 | SEG:seg | : | : | : |
Description
BnaC03g52170D
Coordinates
chrLK031848:+:674402..679510
Molecular Weight (calculated)
100409.0 Da
IEP (calculated)
7.023
GRAVY (calculated)
-0.595
Length
909 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPSDIMEQR GVSTPSHFRE DTRISSERQF GFLKTDLMPE NQGGRERFSN LPKSSWTPES HQLKPESSLS EVHPSVSPSA RNTTNGSQWE SSLFSSSLSD
101: TFSRKLRLQR SNMLSPMSAN TVVTHREEEP SESLEEIEAQ TIGNLLPDED DLFAEVMGDV GRKSRANGDD LDDFDLFSSV GGMELDGDVF PPMGPRNGER
201: GRNNSVGEHH RVEIPSRTIL AGNISSNVED YELKVLFEQF GDIQALHTAC NNRGFIMVSY YDIRAAQNAA RALHNKLLRG TKLDIRYSIP KEIPSGKDAS
301: KGALLITNID SSISNEELNR MVKSYGEIKE IRRTMHDNPQ IYLEFFDIRV AEAALGGLNG LEVAGKQLKL ALTYPESQRY MSQFVAHDAE GFLPKMSFTN
401: TSSGHMGRHF PGIIPSTSID GGPMGISHSS VGSPVNSFIE RHRSLSIPIG FPPLANVISA SKPGIQEHVH PLDNSNMGIQ SMPNLHPHSF SEYLDNFTNG
501: SPYKSSTAFS EVVSDGSKAN DAFMIHNVRG VDGFNGGGIG SPMNQNSRRP NLNLWSNSNT QQQNPSGGMM WPSSPSHLNS ITSQRPPVTV FSRAPPVMVN
601: MASSPVHHHI GSAPVLNSPF WDRRQAYVAE SLESPGFHIG SHGSMGFPGS SPSHPMEIGS HKSFSHVAGN RMDINSQNAV LRSPQQLSHL FPGRNPMVSM
701: AGSFDSPNER YRNLSHRRSE SSSSHADKKL FELDVDRILR GDDVRTTLML KNIPNKYTSK MLLSAIDEHC KGTQAGNKCN VGYAFINLIE PEKIVPFYKA
801: FNGKKWEKFN SEKVATLTYA RIQGKVALIA HFQNSSLMNE DKRCRPILFH TDGPNAGDQE PFPMGTNIRS RPGKPRSSSI DNHNGFSIAS VSENREEPPN
901: GTDPFLKEN
101: TFSRKLRLQR SNMLSPMSAN TVVTHREEEP SESLEEIEAQ TIGNLLPDED DLFAEVMGDV GRKSRANGDD LDDFDLFSSV GGMELDGDVF PPMGPRNGER
201: GRNNSVGEHH RVEIPSRTIL AGNISSNVED YELKVLFEQF GDIQALHTAC NNRGFIMVSY YDIRAAQNAA RALHNKLLRG TKLDIRYSIP KEIPSGKDAS
301: KGALLITNID SSISNEELNR MVKSYGEIKE IRRTMHDNPQ IYLEFFDIRV AEAALGGLNG LEVAGKQLKL ALTYPESQRY MSQFVAHDAE GFLPKMSFTN
401: TSSGHMGRHF PGIIPSTSID GGPMGISHSS VGSPVNSFIE RHRSLSIPIG FPPLANVISA SKPGIQEHVH PLDNSNMGIQ SMPNLHPHSF SEYLDNFTNG
501: SPYKSSTAFS EVVSDGSKAN DAFMIHNVRG VDGFNGGGIG SPMNQNSRRP NLNLWSNSNT QQQNPSGGMM WPSSPSHLNS ITSQRPPVTV FSRAPPVMVN
601: MASSPVHHHI GSAPVLNSPF WDRRQAYVAE SLESPGFHIG SHGSMGFPGS SPSHPMEIGS HKSFSHVAGN RMDINSQNAV LRSPQQLSHL FPGRNPMVSM
701: AGSFDSPNER YRNLSHRRSE SSSSHADKKL FELDVDRILR GDDVRTTLML KNIPNKYTSK MLLSAIDEHC KGTQAGNKCN VGYAFINLIE PEKIVPFYKA
801: FNGKKWEKFN SEKVATLTYA RIQGKVALIA HFQNSSLMNE DKRCRPILFH TDGPNAGDQE PFPMGTNIRS RPGKPRSSSI DNHNGFSIAS VSENREEPPN
901: GTDPFLKEN
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.