CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56219	Canola	plastid	92.83	88.59
AT1G67770.1	Thale cress	plastid	65.34	62.24
KRH31364	Soybean	cytosol, nucleus	18.73	54.34
CDX83589	Canola	nucleus	49.8	43.03
CDX99727	Canola	nucleus	50.4	41.96
CDY13612	Canola	nucleus	50.6	41.78
CDY40990	Canola	nucleus	50.6	41.5
KRG97510	Soybean	nucleus	44.42	41.37
Solyc05g013930.1.1	Tomato	nucleus	51.0	40.38
PGSC0003DMT400027957	Potato	nucleus	37.85	39.26
VIT_14s0219g00270.t01	Wine grape	plastid	42.83	38.46
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	38.65	38.42
VIT_01s0137g00320.t01	Wine grape	nucleus	48.8	37.23
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	40.64	35.54
KRH31365	Soybean	nucleus	22.51	34.77
GSMUA_Achr8P32080_001	Banana	nucleus	44.02	31.98
Zm00001d042445_P001	Maize	nucleus	41.04	31.02
TraesCS3B01G447800.1	Wheat	nucleus	41.43	30.77
TraesCS3A01G413400.1	Wheat	nucleus	41.43	30.59
HORVU3Hr1G091930.1	Barley	nucleus	41.24	30.58
CDY44647	Canola	nucleus, plastid	14.54	30.54
Os01t0907900-01	Rice	nucleus	41.43	30.45
EES01930	Sorghum	nucleus	40.04	30.18
TraesCS3D01G407900.1	Wheat	nucleus	40.84	30.01
CDY62093	Canola	nucleus, plastid	14.54	29.2
CDY14020	Canola	plastid	15.74	28.21
CDY40768	Canola	nucleus	15.54	25.83
CDY61671	Canola	nucleus	26.89	20.33
CDX78826	Canola	nucleus	26.89	20.3
CDY15631	Canola	nucleus	26.69	18.21
CDX94663	Canola	nucleus	26.29	17.91
CDY48336	Canola	nucleus	26.89	17.46
CDX99820	Canola	nucleus	26.89	17.05
CDX79841	Canola	nucleus	25.5	16.52
CDX83512	Canola	nucleus	24.9	15.88
CDY60197	Canola	endoplasmic reticulum, plasma membrane	25.1	15.59
CDY42812	Canola	nucleus	24.5	15.51
CDY42813	Canola	nucleus	24.5	15.06
CDX70025	Canola	nucleus	24.7	13.96
CDX98985	Canola	nucleus	24.5	13.9
CDY30687	Canola	nucleus	23.51	13.8
CDY30686	Canola	nucleus	14.54	13.77
CDX86947	Canola	nucleus	21.91	12.1
CDY00238	Canola	nucleus	21.91	12.04
CDY71762	Canola	nucleus	2.59	5.42
CDY72437	Canola	nucleus	2.59	5.18

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078EQN6	EnsemblPlants:CDY01848	ProteinID:CDY01848	ProteinID:CDY01848.1
InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00113025001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EDC081	SEG:seg	:	:	:	:

Description

BnaC06g28880D

Coordinates

chrLK031929:+:849118..851222

Molecular Weight (calculated)

56940.5 Da

IEP (calculated)

9.778

GRAVY (calculated)

-0.435

Length

502 amino acids

Sequence
(BLAST)

001: MSETGYPGHL NPTAPMFLPA NLNPVPFFIP TRIYLPLPPP PPPPPYPRFF SCLAGPLPPA PPHLLPSLSI PTRTLVLLPV PADVSESSIR RDLEVFGEVR
101: GVQMERAHEG IVTVHFYDLR NSQRALREIR ERHMHQQQVR FGRGYTAARG LVSGRTVWAH FVFPHFRAVP EGNNQGSLVI MNLEPTVSSA ALRQIFEAYG
201: EVKESRETPF KREQRFVEFY DVRDAALARR EMDGKSINGK PIIVQFSRPG GFNKKLILAS RFNKSFLSNI HHPPPPPPPH FRRQVPSPAS QLRRRGPRSK
301: MHTSKKNSIV DTRFIISEDA IAESRDGRTT VMIKNIPNKY TQKLLLNMLD AHCNDCNEEI VSEGNQMPMS SYDFVYLPID FGNKCNVGYG FVNMTTPEAV
401: WRLYKAFHNN HWRLFQSNKI CEVTYARVQG LESLKEHFKH LKLAKVEMEY KPVIFSPARD GRLLTEPIAI VVDPGTRPVE DSCPSRDETV TSCSSSIERS
501: DG

Best Arabidopsis Sequence Match ( AT1G67770.1 )
(BLAST)

001: MSVTGPFSHP TNLNPTAPAF FPAINQHQNQ NPSLIPTRFF LPHPPPPPPP PPPPLYFSYF SLPPPPPPPH LPPTSVTPTR AVMLLQVPAT VTETSLRRDM
101: ELFGEVRGVQ MERAHEGIVI FHFYNLINSQ RAFNEIRYRH MQQQEQQQHF HFTTARGLVS GHSLWAHFVF PQLNAVPEGN NQGSLVIMNL EPTVSSSTLR
201: HIFQVYGEVK QVRETPCKRE QRFVEFFDVR DAAKALRVMN GKVISGKPMV IQFSRPGGLT KKLFFASHFH KNFIFNNEHH YYPPPPPPSR MVKSDILMYK
301: QQQKKKKKKY VKKNLGDPYF MINENAITGG EFRDGRTTVM IKNIPNKYTQ KLLLKMLDTH CKDCNQSVIK EGNKTPMSSY DFVYLPIDFS NKSNVGYGFV
401: NMTSPEAVWR LYKSFHNQHW RDFTTTRKIC EVTYARIQGL ESLREHFKNV RLAGVEIDEY MPVVFSPPRD GRLSPEPVAI VDPWDKPVDD EDRCCKSRDG
501: FVVSDKKMVG SDGCGFCLSE RIENGGV

Arabidopsis Description

TEL2F12A21.10 [Source:UniProtKB/TrEMBL;Acc:Q9FXE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.