Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030135.1-P | Field mustard | nucleus | 97.96 | 97.96 |
| CDX94663 | Canola | nucleus | 92.39 | 92.27 |
| CDY48336 | Canola | nucleus | 85.46 | 81.37 |
| CDX99820 | Canola | nucleus | 86.28 | 80.18 |
| AT1G29400.3 | Thale cress | nucleus | 81.52 | 75.0 |
| CDX78826 | Canola | nucleus | 52.99 | 58.65 |
| CDY61671 | Canola | nucleus | 52.72 | 58.43 |
| CDX83512 | Canola | nucleus | 41.85 | 39.14 |
| CDY42812 | Canola | nucleus | 41.3 | 38.34 |
| CDX79841 | Canola | nucleus | 40.35 | 38.32 |
| CDY42813 | Canola | nucleus | 41.58 | 37.45 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 39.95 | 36.39 |
| CDY30687 | Canola | nucleus | 37.91 | 32.63 |
| CDX98985 | Canola | nucleus | 38.59 | 32.09 |
| CDX70025 | Canola | nucleus | 38.32 | 31.76 |
| CDY00238 | Canola | nucleus | 37.64 | 30.31 |
| CDX86947 | Canola | nucleus | 37.36 | 30.25 |
| CDY30686 | Canola | nucleus | 21.06 | 29.25 |
| CDY01848 | Canola | plastid | 18.21 | 26.69 |
| CDY71762 | Canola | nucleus | 8.42 | 25.83 |
| CDY56219 | Canola | plastid | 17.66 | 24.71 |
| CDY72437 | Canola | nucleus | 8.29 | 24.3 |
| CDX83589 | Canola | nucleus | 18.89 | 23.92 |
| CDY13612 | Canola | nucleus | 19.29 | 23.36 |
| CDY40990 | Canola | nucleus | 19.16 | 23.04 |
| CDX99727 | Canola | nucleus | 18.61 | 22.72 |
| CDY14020 | Canola | plastid | 8.56 | 22.5 |
| CDY40768 | Canola | nucleus | 8.29 | 20.2 |
| CDY44647 | Canola | nucleus, plastid | 6.11 | 18.83 |
| CDY62093 | Canola | nucleus, plastid | 6.25 | 18.4 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078FR90 | UniProt:A0A078FR90 | EnsemblPlants:CDY15631 | ProteinID:CDY15631 |
| ProteinID:CDY15631.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00089822001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE0E67 | SEG:seg | : |
Description
BnaA07g08020DBnaA07g08020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR90]
Coordinates
chrLK032056:+:1589..5012
Molecular Weight (calculated)
81678.2 Da
IEP (calculated)
6.356
GRAVY (calculated)
-0.519
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIPQEEVAG AWGLPSRFGR HNHLPTDSSL FSTSLPLLPH AKLQSSDSRD GFSFTDDAAA SHPFGNMLPD EEDLLTGMMD DLDLAQIPDS PDDYDLFGSG
101: GGMELDTDSR DGFSMSGGPP RLSIPSLAGT GTVTGEHPYG EHPSRTLFVR NINSNVEDSE LKTLFEQYGD IRTLYTTCKH RGFVMISYYD IRAALMAMRS
201: LQNKPLRRRK LDIHFSIPKD NPAEKDMNQG TLVVFNLDPS ITNDDLYVIF GVHGEIKEIR ETPHKWHHKF VEFYDVRDAE AALKALNRCE IAGKRIKVEP
301: SRPGGARRSL MLQLNQELED DDLHYLPLLG SPMANSPPST WMKSPVEGSP LQSVMSRSPF FGFSPTRNSN LSGLSSAPNS QAPGSKLAPI GRAQTGSNVF
401: QETKMDNKYA GNVSPSGPLI SNGGGIETLS GSEFLWGSPN SRSEPSNASV WSTSSSGIPF SSAHVHRSVP SPHHHLNVGS APSGVPLEKR FGFFPESSKD
501: TMFMNSFGLN GGSFPSKMAS HGIMVEYRMM SSPRFISLLN PGRFTTSGFD GLYENERARR VENYSSQVES RKQFQLDLEK IMNGEDSRTT LMIKNIPNKY
601: TSKMLLAAID EKNQGTYNFL YLPIDFKNKC NVGYAFINML SPDLLIPFYE AFNGKKWEKF NSEKVASLAY ARIQGKSALI SHFQNSSLMN EDMRCRPIIF
701: DIPNSSESVQ QVIGKETKSV DLRDSELNDD GGREKW
101: GGMELDTDSR DGFSMSGGPP RLSIPSLAGT GTVTGEHPYG EHPSRTLFVR NINSNVEDSE LKTLFEQYGD IRTLYTTCKH RGFVMISYYD IRAALMAMRS
201: LQNKPLRRRK LDIHFSIPKD NPAEKDMNQG TLVVFNLDPS ITNDDLYVIF GVHGEIKEIR ETPHKWHHKF VEFYDVRDAE AALKALNRCE IAGKRIKVEP
301: SRPGGARRSL MLQLNQELED DDLHYLPLLG SPMANSPPST WMKSPVEGSP LQSVMSRSPF FGFSPTRNSN LSGLSSAPNS QAPGSKLAPI GRAQTGSNVF
401: QETKMDNKYA GNVSPSGPLI SNGGGIETLS GSEFLWGSPN SRSEPSNASV WSTSSSGIPF SSAHVHRSVP SPHHHLNVGS APSGVPLEKR FGFFPESSKD
501: TMFMNSFGLN GGSFPSKMAS HGIMVEYRMM SSPRFISLLN PGRFTTSGFD GLYENERARR VENYSSQVES RKQFQLDLEK IMNGEDSRTT LMIKNIPNKY
601: TSKMLLAAID EKNQGTYNFL YLPIDFKNKC NVGYAFINML SPDLLIPFYE AFNGKKWEKF NSEKVASLAY ARIQGKSALI SHFQNSSLMN EDMRCRPIIF
701: DIPNSSESVQ QVIGKETKSV DLRDSELNDD GGREKW
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.