CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13612	Canola	nucleus	96.04	91.78
CDX99727	Canola	nucleus	80.72	77.78
CDY40990	Canola	nucleus	81.24	77.12
AT3G26120.1	Thale cress	nucleus	80.03	75.61
KRH31364	Soybean	cytosol, nucleus	17.9	60.12
CDY01848	Canola	plastid	43.03	49.8
CDY56219	Canola	plastid	42.0	46.39
KRG97510	Soybean	nucleus	40.79	43.97
Solyc05g013930.1.1	Tomato	nucleus	46.64	42.74
PGSC0003DMT400027957	Potato	nucleus	33.73	40.5
VIT_14s0219g00270.t01	Wine grape	plastid	38.9	40.43
VIT_01s0137g00320.t01	Wine grape	nucleus	45.09	39.82
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	34.6	39.8
KRH31365	Soybean	nucleus	21.51	38.46
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.14	36.59
EES01930	Sorghum	nucleus	38.38	33.48
GSMUA_Achr8P32080_001	Banana	nucleus	39.07	32.85
Zm00001d042445_P001	Maize	nucleus	37.52	32.83
Os01t0907900-01	Rice	nucleus	37.87	32.21
TraesCS3B01G447800.1	Wheat	nucleus	37.18	31.95
HORVU3Hr1G091930.1	Barley	nucleus	36.83	31.61
CDY44647	Canola	nucleus, plastid	12.91	31.38
TraesCS3D01G407900.1	Wheat	nucleus	36.83	31.33
TraesCS3A01G413400.1	Wheat	nucleus	36.49	31.18
CDY62093	Canola	nucleus, plastid	13.08	30.4
CDY14020	Canola	plastid	13.6	28.21
CDY40768	Canola	nucleus	13.25	25.5
CDY61671	Canola	nucleus	24.44	21.39
CDX78826	Canola	nucleus	24.1	21.05
CDY15631	Canola	nucleus	23.92	18.89
CDX94663	Canola	nucleus	23.24	18.32
CDY48336	Canola	nucleus	23.75	17.85
CDX99820	Canola	nucleus	23.92	17.55
CDX79841	Canola	nucleus	22.55	16.9
CDX83512	Canola	nucleus	22.89	16.9
CDY42812	Canola	nucleus	22.72	16.65
CDY60197	Canola	endoplasmic reticulum, plasma membrane	22.55	16.21
CDY42813	Canola	nucleus	22.72	16.16
CDY30687	Canola	nucleus	21.34	14.5
CDX70025	Canola	nucleus	21.51	14.08
CDX98985	Canola	nucleus	21.34	14.01
CDY30686	Canola	nucleus	12.05	13.21
CDY00238	Canola	nucleus	19.79	12.58
CDX86947	Canola	nucleus	19.45	12.43
CDY71762	Canola	nucleus	2.24	5.42
CDY72437	Canola	nucleus	2.24	5.18

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078D5J3	EnsemblPlants:CDX83589	ProteinID:CDX83589	ProteinID:CDX83589.1
InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00139246001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EEC866	SEG:seg	:	:	:	:

Description

BnaC07g23290D

Coordinates

chrLK031833:+:843218..845826

Molecular Weight (calculated)

65372.2 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.534

Length

581 amino acids

Sequence
(BLAST)

001: MEDFRAFPFA GNLDPRAQEF VPAPLNPMSS RFHFPYTSLP PPLPPPPPSY GLSPSDPRMF TFFNIPPHPM MFPPAPHPPP PPPRPWFNGF SAVQRLSPPS
101: NSPTRSLSLI YVPRDVTEST VRRDLEVFGD VRGVQMERIS EGVLTVHFYD LRDAKRAVRE FCGRHMQHQE RLGSSSGGGS VWRSPSSSAR GFVSGRPVWA
201: HFVVPDTNAV PGGCNQGTLV IFNLDPDVSS TALRQIFQVY GSIKELRETP YKKHQRFIEF YDVRDAVNAF DRMNGEEIYG KQVVIEFSRP GGLKNNFTPF
301: RQPHKNVSPN NGVDVVEASM RSLCDIDDEA ESETRSKNVA KLGRKKQMKS MELSQFLISE EAMNDPSCRD PRTTLMIKNI PNKYSQKLLL NMLDNHCIHI
401: NQAITEEERG EYKAHPDQPI SSYDFVYLPM DFNNKCNVGY GFVNMTSPEA AWRLYKAFHL QRWEIFNSHK ICQITYARVQ GLEDLKEHFK SSKFPCEAEL
501: YLPVVFSPPR DGKQLTEPVS ININDCTGLN TIHHLEPIDG PDHSVGGSCC GSDNDNSQED GLSGNNIDGG HSFTVVGATS F

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.