Factsheet for GSMUA_Achr7P02820_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31364	Soybean	cytosol, nucleus	21.39	62.43
GSMUA_Achr8P32080_001	Banana	nucleus	79.8	58.32
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	59.6	52.44
GSMUA_Achr11P...	Banana	cytosol	13.47	42.5
VIT_14s0219g00270.t01	Wine grape	plastid	45.54	41.14
CDY01848	Canola	plastid	38.42	38.65
Bra036347.1-P	Field mustard	plastid	41.58	38.6
KRG97510	Soybean	nucleus	40.79	38.22
Zm00001d042445_P001	Maize	nucleus	48.71	37.05
EES01930	Sorghum	nucleus	48.12	36.49
Os01t0907900-01	Rice	nucleus	49.11	36.31
Solyc05g013930.1.1	Tomato	nucleus	45.54	36.28
CDY56219	Canola	plastid	37.43	35.93
VIT_01s0137g00320.t01	Wine grape	nucleus	46.53	35.71
HORVU3Hr1G091930.1	Barley	nucleus	47.72	35.6
TraesCS3D01G407900.1	Wheat	nucleus	47.92	35.43
TraesCS3A01G413400.1	Wheat	nucleus	47.52	35.29
TraesCS3B01G447800.1	Wheat	nucleus	47.13	35.21
AT1G67770.1	Thale cress	plastid	36.44	34.91
CDX99727	Canola	nucleus	41.39	34.66
AT3G26120.1	Thale cress	nucleus	42.18	34.63
CDX83589	Canola	nucleus	39.8	34.6
CDY40990	Canola	nucleus	41.78	34.48
Bra004255.1-P	Field mustard	plastid	37.43	34.36
CDY13612	Canola	nucleus	40.79	33.88
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	19.8	33.78
Bra025185.1-P	Field mustard	nucleus	40.59	33.72
PGSC0003DMT400027957	Potato	nucleus	28.12	29.34
KRH31365	Soybean	nucleus	16.44	25.54
GSMUA_Achr6P13670_001	Banana	nucleus	23.17	18.93
GSMUA_Achr10P...	Banana	nucleus	25.54	15.3
GSMUA_Achr10P...	Banana	nucleus	26.34	13.91
GSMUA_Achr4P31220_001	Banana	plastid	24.75	13.89
GSMUA_Achr6P11050_001	Banana	nucleus	26.34	13.78
GSMUA_Achr2P21440_001	Banana	mitochondrion, nucleus	24.95	13.61
GSMUA_Achr10P...	Banana	nucleus	27.13	13.55
GSMUA_Achr2P20130_001	Banana	nucleus	25.35	10.42
GSMUA_Achr3P03100_001	Banana	nucleus	25.94	9.86
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	24.75	9.09

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ncoils:Coil	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr7G02820_001	EnsemblPlants:GSMUA_Achr7P02820_001	EnsemblPlants:GSMUA_Achr7T02820_001	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0TE72	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000295B474	SEG:seg	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G02820_001]

Coordinates

chr7:-:2263654..2266661

Molecular Weight (calculated)

54338.0 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.429

Length

505 amino acids

Sequence
(BLAST)

001: MATGTRAVVL SMVPRHVGEA EVRAGMEAFG GVRAVEMGAL AADGVVTVHF YDLRSAEAAV AEVREQHARR QARIGGSGLG TIAGYAVWAQ FAASSLDEPN
101: QGSILVLNSD PRVSFATLRD MFEPFGALKE VRETPSKPQH KLVEFFDTRD AARALAELNG KEINGRLLLL EFGTPGSGQG RRSYSSYSKL SVHGHGLRGS
201: PLPPRFLRGG SQPSRWSQAS GASARSSSSS SLPGASGEAS QGSTVVPKKT STNTAPAASR FLFKEVESEE SSESSCRDSR TTVMIKNIPN KYSQKLLLNM
301: LDNHCIQCNE QTGEGADEPY SAYDFVYLPI DFNNKCNVGY GFVNLTSPEA AFRLYKAFHQ QPWEVFNSRK ICQVTYARLQ GLEALKEHFR KSKFACDNDE
401: YMPVVFSPPR DGRQLSEPVP VVAVGSEQRL EDLSWTHCQG TDLADASQQV ADSGGASSTT TSTHAPSDNA DGGDDDDDDD DVVGSGGGDE TSVGLSEAVL
501: HLSFN

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.