Factsheet for GSMUA_Achr5P05840_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G025080.3	Barley	mitochondrion	26.69	46.2
GSMUA_Achr11P...	Banana	cytosol	24.32	45.0
VIT_03s0038g00390.t01	Wine grape	cytosol	20.27	42.86
TraesCS6A01G131000.1	Wheat	mitochondrion	24.66	41.48
PGSC0003DMT400008115	Potato	cytosol	19.59	40.28
AT1G37140.1	Thale cress	plastid	26.69	33.91
Solyc01g110260.1.1	Tomato	cytosol	21.28	33.87
Bra035509.1-P	Field mustard	cytosol, plastid	26.35	32.64
CDY44647	Canola	nucleus, plastid	26.01	32.22
CDY62093	Canola	nucleus, plastid	26.69	31.6
Solyc01g110230.1.1	Tomato	cytosol	26.35	30.71
KRH18810	Soybean	cytosol	27.7	30.48
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	25.34	29.88
Solyc01g110240.1.1	Tomato	cytosol, peroxisome, plastid	19.59	29.0
KRH16604	Soybean	cytosol, nucleus, peroxisome	26.01	28.31
TraesCS7B01G269200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	29.73	27.94
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	29.39	27.27
Zm00001d006207_P001	Maize	plastid	30.74	27.25
Zm00001d053860_P001	Maize	plastid	32.09	27.22
Solyc01g110200.1.1	Tomato	plastid	25.34	27.08
Os09t0531200-01	Rice	cytosol	29.39	26.93
PGSC0003DMT400085334	Potato	peroxisome	24.32	26.87
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	21.96	26.21
PGSC0003DMT400090567	Potato	plastid	26.35	26.09
CDY14020	Canola	plastid	24.66	26.07
Solyc05g056360.1.1	Tomato	cytosol	29.05	26.06
PGSC0003DMT400091031	Potato	cytosol	21.62	25.81
Bra028677.1-P	Field mustard	nucleus, plastid	24.32	25.71
EES04542	Sorghum	plastid	29.39	25.07
OQU89813	Sorghum	nucleus, plastid	30.74	24.73
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	27.7	24.62
Solyc01g110220.1.1	Tomato	cytosol	20.27	24.59
PGSC0003DMT400060283	Potato	cytosol	24.66	24.25
CDY40768	Canola	nucleus	24.66	24.17
Solyc01g110210.1.1	Tomato	nucleus	20.61	23.74
Os02t0157900-00	Rice	mitochondrion, plastid	31.08	23.65
HORVU5Hr1G081420.2	Barley	mitochondrion	27.36	23.55
VIT_18s0001g03840.t01	Wine grape	mitochondrion	23.65	23.1
AT5G07930.3	Thale cress	nucleus	22.64	22.79
TraesCS6B01G159300.2	Wheat	plastid	30.74	22.2
KRH29371	Soybean	nucleus	27.36	22.01
KRH24390	Soybean	nucleus	25.0	20.96
TraesCS5B01G319500.1	Wheat	plastid	27.7	20.87
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	33.78	19.8
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.82	18.99
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	15.2	18.0
GSMUA_Achr8P32080_001	Banana	nucleus	38.85	16.64
GSMUA_Achr6P13670_001	Banana	nucleus	21.96	10.52
GSMUA_Achr10P...	Banana	nucleus	26.01	9.13
GSMUA_Achr6P11050_001	Banana	nucleus	27.03	8.29
GSMUA_Achr4P31220_001	Banana	plastid	24.66	8.11
GSMUA_Achr10P...	Banana	nucleus	26.01	8.05
GSMUA_Achr10P...	Banana	nucleus	26.69	7.81
GSMUA_Achr2P21440_001	Banana	mitochondrion, nucleus	24.32	7.78
GSMUA_Achr2P20130_001	Banana	nucleus	25.68	6.19
GSMUA_Achr3P03100_001	Banana	nucleus	25.68	5.72
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	25.34	5.45

Protein Annotations

EnsemblPlants:GSMUA_Achr5P05840_001	EnsemblPlants:GSMUA_Achr5T05840_001	EnsemblPlantsGene:GSMUA_Achr5G05840_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
PANTHER:PTHR45087	PFAM:PF04059	SEG:seg	SUPFAM:SSF54928	UniParc:UPI000295F7B1	UniProt:M0SW13
MapMan:35.1	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G05840_001]

Coordinates

chr5:+:4339498..4340694

Molecular Weight (calculated)

33289.7 Da

IEP (calculated)

9.202

GRAVY (calculated)

-0.647

Length

296 amino acids

Sequence
(BLAST)

001: MPLRPFPYGH SSPPYFYPPP CLHPYLLFPT LSPPPPLHPG LSPPFSNQPC QVQQHSATQT DHLPIGTIPE EGIEQPHNNP PPPAPPHAAV AQCPKHKDLK
101: PREKKRLICR SRPGQSSGNR EIGEQYNQLG VSLEFDEDFH SKADQRTTVM IKNIPNKFSR DMLIGLLDEH CAKENEKAQL LDSAPSQYDF VYLPIDFKNG
201: CNLGYAFVNF TTAAAARRLY GAMHRHEWKV FGSKKISHVC YARIQGRKAL VNNFKNSNFR CDTDEFFPAV LSPPRDGATS LPSPIPVGRR WKGVPR

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.