Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 48.73 | 79.48 |
| VIT_10s0003g02670.t01 | Wine grape | nucleus | 39.56 | 61.54 |
| KRH12823 | Soybean | nucleus | 37.38 | 59.63 |
| KRH37781 | Soybean | nucleus | 37.24 | 59.4 |
| EER89028 | Sorghum | nucleus | 36.44 | 59.29 |
| Zm00001d045611_P001 | Maize | nucleus | 36.44 | 59.15 |
| GSMUA_Achr6P13670_001 | Banana | nucleus | 26.47 | 58.9 |
| Os02t0719800-02 | Rice | plasma membrane | 36.07 | 58.49 |
| Zm00001d035869_P017 | Maize | golgi | 36.22 | 58.38 |
| TraesCS7D01G003000.1 | Wheat | plastid | 36.44 | 57.59 |
| TraesCS7A01G003100.1 | Wheat | plastid | 36.29 | 57.49 |
| TraesCS4A01G495500.1 | Wheat | plastid | 36.36 | 57.08 |
| GSMUA_Achr4P31220_001 | Banana | plastid | 37.24 | 56.89 |
| HORVU7Hr1G000370.12 | Barley | nucleus, plastid | 36.58 | 56.64 |
| PGSC0003DMT400007982 | Potato | nucleus | 34.25 | 55.35 |
| Solyc02g071270.1.1 | Tomato | extracellular | 33.16 | 53.84 |
| Os02t0319100-01 | Rice | nucleus | 31.2 | 52.9 |
| GSMUA_Achr3P03100_001 | Banana | nucleus | 45.45 | 47.06 |
| GSMUA_Achr2P20130_001 | Banana | nucleus | 38.33 | 42.92 |
| GSMUA_Achr10P... | Banana | nucleus | 28.51 | 41.0 |
| GSMUA_Achr10P... | Banana | nucleus | 29.09 | 39.56 |
| GSMUA_Achr2P21440_001 | Banana | mitochondrion, nucleus | 26.62 | 39.52 |
| GSMUA_Achr6P11050_001 | Banana | nucleus | 26.91 | 38.34 |
| GSMUA_Achr11P... | Banana | cytosol | 3.64 | 31.25 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 5.45 | 25.34 |
| GSMUA_Achr7P02820_001 | Banana | cytosol, nucleus, plastid | 9.09 | 24.75 |
| GSMUA_Achr8P01280_001 | Banana | cytoskeleton, cytosol, nucleus | 9.96 | 23.87 |
| GSMUA_Achr8P32080_001 | Banana | nucleus | 10.18 | 20.26 |
Protein Annotations
| Gene3D:1.10.630.10 | Gene3D:3.30.70.330 | MapMan:50.1.13 | InterPro:Cyt_P450 | InterPro:Cyt_P450_E_grp-I | InterPro:Cyt_P450_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016705 | GO:GO:0020037 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr6G13690_001 |
| EnsemblPlants:GSMUA_Achr6P13690_001 | EnsemblPlants:GSMUA_Achr6T13690_001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR036396 | UniProt:M0T6R7 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00067 | PFAM:PF00076 |
| PFAM:PF04059 | PRINTS:PR00385 | PRINTS:PR00463 | PFscan:PS50102 | PFscan:PS51257 | PANTHER:PTHR44127 |
| PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF48264 | SUPFAM:SSF54928 |
| TMHMM:TMhelix | UniParc:UPI000296699E | SEG:seg | : | : | : |
Description
Putative Secologanin synthase [Source:GMGC_GENE;Acc:GSMUA_Achr6G13690_001]
Coordinates
chr6:-:9111528..9121900
Molecular Weight (calculated)
152866.0 Da
IEP (calculated)
7.362
GRAVY (calculated)
-0.402
Length
1375 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEMLRLALL ACSLAVLLFS CFKVAYSLWW KPKALERHLR QQGIRGNPYR FFYGDLKDDM HARIIASSKP MDLSHQFVPR VAPLLHKIVQ KYGKISVVWI
0101: GTTPRVIIHD PELMTKVLLD RMQQFRKSRL NPLVKLIGMG VPTLDGEEWA RRRRVINPAF HLEKLKEMAP AFLKSCVDMV ERWRNLTSPE GSCEVDVWNE
0201: FQNLTADIIS RTAFGSSYKE GKKIFELQKE QAVLVMEAAR APYVPGFRFV PTAKNKRRMH IHREIKSMLM DMINKKLDSI AKGESTADDL LGLLVQYSND
0301: GDHGNCSITT DDVIEECKLF YFAGQETTSV LLTWTLILLS IYPTWQQRAR EEVVSVCGKN SPDFESTSRL KTVTMILHEV LRLYPPATGI LRRTIKTTKL
0401: GGFSFPAGIE LFLPILLIHH DRETWGEDAE EFKPERFSEG VSKASRTPNA RNERGRPVPL SWVSLLISAD WGGSPCRLCW DSWVELGGIA PPVFASVLEE
0501: SRVTSDADLS GCVAWVSTME QASENSVPIW TARKAENAWV IPSSSNALYG SSDVSLFSSS LPVLRHDKLN FRDSHVGIQS TVNAASKLKK LNNDMEGKDP
0601: LDDLDLQEIG VMLPDDEEAL LSGIMDDFDL NGLPGQVDEL EDYDLFGSVG GMELDSDPTE SIAIGVAKSS VSDGSLGNGF NQYSLPNGVG TISGEHPYGE
0701: HPSRTLFVRN INSNVEDSEL QLLFEQYGDI RSLYTACKHR GFVMISYYDI RSARSAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDMNQGT LVIFNLEHSV
0801: SNDDLKQIFG AYGEVKEIRE TPHKRHHKFI EFYDVRAAEA ALRSLNKSDI AGKRIKLEPS RPGGSRRSLM QQLTHELEQD ETRVYRHHGG LSTANSPPGP
0901: WAQFSSPNDN NPLQIFSKSP SGAAMSPIGN NDMSGLSSLL SPKISSVKIA PIGKDQNRAS HPDQISSSSS PFLGGGYQQS HSFPDHGHGV LTSTPGNLTS
1001: FGPSTPNASG VGSLTGPQFL WGNLTSYMDN VQSSSWQSRA TGSSIMSNGQ GQAHSFLYSS HHGSFLGSSH NQHPHHVGSA PSVPFVRQYG FFPESPKTSL
1101: MNQVPFRNIG INQNGGSLHI NMTPRATVNE GIISGNMPDN SSPNVRMMPS QRFGPVLFHN APYSGPSSIG INGLVDRNRS RRADNQGIQL DNKQYQLDLE
1201: KIIKGEDTRT TIMIKNIPNK YTSKMLLAAI DETHKGAYDF LYLPIDFKNK CNVGYAFINM VSPAHIISFY EGFNGKKWEK FNSEKVASLA YARIQGRAAL
1301: VAHFQNSSLM NEDKRCRPIL FDSEGAEAGD QELFPLSSTR VYQEDRTVNL LQSAQGISPN GNPEKSAFSA TSSED
0101: GTTPRVIIHD PELMTKVLLD RMQQFRKSRL NPLVKLIGMG VPTLDGEEWA RRRRVINPAF HLEKLKEMAP AFLKSCVDMV ERWRNLTSPE GSCEVDVWNE
0201: FQNLTADIIS RTAFGSSYKE GKKIFELQKE QAVLVMEAAR APYVPGFRFV PTAKNKRRMH IHREIKSMLM DMINKKLDSI AKGESTADDL LGLLVQYSND
0301: GDHGNCSITT DDVIEECKLF YFAGQETTSV LLTWTLILLS IYPTWQQRAR EEVVSVCGKN SPDFESTSRL KTVTMILHEV LRLYPPATGI LRRTIKTTKL
0401: GGFSFPAGIE LFLPILLIHH DRETWGEDAE EFKPERFSEG VSKASRTPNA RNERGRPVPL SWVSLLISAD WGGSPCRLCW DSWVELGGIA PPVFASVLEE
0501: SRVTSDADLS GCVAWVSTME QASENSVPIW TARKAENAWV IPSSSNALYG SSDVSLFSSS LPVLRHDKLN FRDSHVGIQS TVNAASKLKK LNNDMEGKDP
0601: LDDLDLQEIG VMLPDDEEAL LSGIMDDFDL NGLPGQVDEL EDYDLFGSVG GMELDSDPTE SIAIGVAKSS VSDGSLGNGF NQYSLPNGVG TISGEHPYGE
0701: HPSRTLFVRN INSNVEDSEL QLLFEQYGDI RSLYTACKHR GFVMISYYDI RSARSAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDMNQGT LVIFNLEHSV
0801: SNDDLKQIFG AYGEVKEIRE TPHKRHHKFI EFYDVRAAEA ALRSLNKSDI AGKRIKLEPS RPGGSRRSLM QQLTHELEQD ETRVYRHHGG LSTANSPPGP
0901: WAQFSSPNDN NPLQIFSKSP SGAAMSPIGN NDMSGLSSLL SPKISSVKIA PIGKDQNRAS HPDQISSSSS PFLGGGYQQS HSFPDHGHGV LTSTPGNLTS
1001: FGPSTPNASG VGSLTGPQFL WGNLTSYMDN VQSSSWQSRA TGSSIMSNGQ GQAHSFLYSS HHGSFLGSSH NQHPHHVGSA PSVPFVRQYG FFPESPKTSL
1101: MNQVPFRNIG INQNGGSLHI NMTPRATVNE GIISGNMPDN SSPNVRMMPS QRFGPVLFHN APYSGPSSIG INGLVDRNRS RRADNQGIQL DNKQYQLDLE
1201: KIIKGEDTRT TIMIKNIPNK YTSKMLLAAI DETHKGAYDF LYLPIDFKNK CNVGYAFINM VSPAHIISFY EGFNGKKWEK FNSEKVASLA YARIQGRAAL
1301: VAHFQNSSLM NEDKRCRPIL FDSEGAEAGD QELFPLSSTR VYQEDRTVNL LQSAQGISPN GNPEKSAFSA TSSED
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.