CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12823	Soybean	nucleus	95.59	95.59
VIT_10s0003g02670.t01	Wine grape	nucleus	73.09	71.27
KRG98918	Soybean	plastid	65.78	66.16
KRH46056	Soybean	nucleus, plastid	65.55	66.0
PGSC0003DMT400007982	Potato	nucleus	63.46	64.28
Solyc02g071270.1.1	Tomato	extracellular	60.79	61.87
GSMUA_Achr10P...	Banana	nucleus	59.05	60.38
EER89028	Sorghum	nucleus	56.73	57.87
Zm00001d045611_P001	Maize	nucleus	56.5	57.5
Os02t0719800-02	Rice	plasma membrane	56.5	57.43
Zm00001d035869_P017	Maize	golgi	56.03	56.62
TraesCS7A01G003100.1	Wheat	plastid	55.22	54.84
TraesCS7D01G003000.1	Wheat	plastid	55.22	54.71
TraesCS4A01G495500.1	Wheat	plastid	55.57	54.68
HORVU7Hr1G000370.12	Barley	nucleus, plastid	55.34	53.72
GSMUA_Achr6P13670_001	Banana	nucleus	37.35	52.1
GSMUA_Achr4P31220_001	Banana	plastid	54.18	51.89
Os02t0319100-01	Rice	nucleus	47.1	50.06
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	59.4	37.24
GSMUA_Achr3P03100_001	Banana	nucleus	56.73	36.82
GSMUA_Achr2P20130_001	Banana	nucleus	50.7	35.59
KRH59735	Soybean	nucleus	39.1	35.55
KRH41056	Soybean	nucleus	38.98	35.22
KRH63864	Soybean	nucleus	39.1	34.71
KRH54096	Soybean	nucleus	38.86	34.64
KRH45198	Soybean	nucleus	26.1	30.49
KRH31364	Soybean	cytosol, nucleus	5.8	28.9
KRG97510	Soybean	nucleus	17.29	27.64
KRH31365	Soybean	nucleus	9.98	26.46
KRH16604	Soybean	cytosol, nucleus, peroxisome	7.08	22.43
KRH18810	Soybean	cytosol	6.26	20.07
KRH24390	Soybean	nucleus	7.77	18.98
KRH29371	Soybean	nucleus	7.66	17.93

Protein Annotations

EntrezGene:100787152	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02005508	EnsemblPlantsGene:GLYMA_09G088700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7LCN4
EnsemblPlants:KRH37781	ProteinID:KRH37781	ProteinID:KRH37781.1	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002337FE6	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:11739521..11746474

Molecular Weight (calculated)

94307.9 Da

IEP (calculated)

6.672

GRAVY (calculated)

-0.556

Length

862 amino acids

Sequence
(BLAST)

001: MRQSFDPSSL GPSKIPSIKI PGKAGNGAWE ALSGSDSYHA SSDASLFSSS LPVLPHEKLN LNETANAYQS IDDISSGFKK LHQDAEGNGS LEDGDTHAIG
101: PALPDDEEEL LAGIMDDFDL SGLPGSLEDL EEYDLFGCGG GMELETDPQE SLTVGISKLS FADSTVGSVL PPYSFPNGVG AVAGEHPYGE HPSRTLFVRN
201: INSNVEDSEL RALFEQYGDI RTLYTACKHR GFVMISYYDI RAARTAMRSL QNKPLRRRKL DIHFSIPKDN PSDKDINQGT LVVFNLDPSV SNEDLRQIFG
301: AYGEVKEIRE TPHKRHHKFI EFYDVRAAEA ALKSLNRSDI AGKRIKLEPS RPGGARRNLM LQLNQELDQE ESRSFRYQVS SPVANSPPGN WLQFNSPVEQ
401: NSMQTINHSP GSRIISPTTG NHLPGLASIL QPQVSNAVKA AAIGNDLGRS SQGEHIFSGM NSSHGATFQS HSLPEPKFSQ YRGALSSIGP STSNGSSVET
501: LSGPQFLWGS PTLYSEHTKP SVWPRSSVGH PFAASNGKSH AFPYSTQNSS FVGSSQHHHH HHVGSAPSGL PFERHFGFHP ESSETSFMNN VGYGGIGLGH
601: NDGNYMVNAG GSVNPNTTIP RNISDNGSSN LRMRSSPRLS PVFLGNGPYP GLPPTTLESL ADRARSRWIE NNGSQVDSKK QFQLDLDKIR SGEDTRTTLM
701: IKNIPNKYTS KMLLAAIDEN HRGAYDFLYL PIDFKKKCNV GYAFINMLSP FLIIPFYETF NGKKWEKFNS EKVASLAYAR IQGKSALVSH FQNSSLMNED
801: KRCRPILFHS EGSEVGDLIV QEHLSSNSNN LNIQAPRPSE FYSSDFAGSP PKAGPSASLD TN

Best Arabidopsis Sequence Match ( AT1G29400.3 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.