Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | KRH00387 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | KRH40797 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | KRH40804 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59735 | Soybean | nucleus | 94.76 | 95.36 |
| KRH63864 | Soybean | nucleus | 74.95 | 73.64 |
| KRH54096 | Soybean | nucleus | 74.42 | 73.42 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 57.76 | 55.21 |
| CDY30686 | Canola | nucleus | 26.73 | 48.11 |
| AT5G61960.1 | Thale cress | nucleus | 46.12 | 48.09 |
| CDY30687 | Canola | nucleus | 42.77 | 47.72 |
| CDX98985 | Canola | nucleus | 44.13 | 47.57 |
| Bra009274.1-P | Field mustard | nucleus | 44.13 | 47.57 |
| CDX70025 | Canola | nucleus | 44.13 | 47.41 |
| AT5G07290.1 | Thale cress | nucleus | 45.07 | 47.41 |
| Bra029297.1-P | Field mustard | nucleus | 44.13 | 47.2 |
| Bra010044.1-P | Field mustard | nucleus | 44.86 | 46.72 |
| CDY00238 | Canola | nucleus | 43.82 | 45.73 |
| CDX86947 | Canola | nucleus | 43.4 | 45.54 |
| KRH45198 | Soybean | nucleus | 33.44 | 43.22 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 26.1 | 41.99 |
| CDY72437 | Canola | nucleus | 10.8 | 41.04 |
| KRG98918 | Soybean | plastid | 36.16 | 40.26 |
| KRH46056 | Soybean | nucleus, plastid | 35.85 | 39.95 |
| KRH12823 | Soybean | nucleus | 35.22 | 38.98 |
| KRH37781 | Soybean | nucleus | 35.22 | 38.98 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 37.32 | 38.03 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 37.42 | 38.02 |
| Os05t0102800-01 | Rice | nucleus | 37.95 | 37.91 |
| Zm00001d035763_P003 | Maize | plastid | 37.0 | 37.24 |
| OQU77194 | Sorghum | plastid | 31.13 | 36.31 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 36.69 | 36.12 |
| KRH31364 | Soybean | cytosol, nucleus | 5.66 | 31.21 |
| KRG97510 | Soybean | nucleus | 14.57 | 25.79 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 6.92 | 24.26 |
| KRH31365 | Soybean | nucleus | 8.07 | 23.69 |
| KRH18810 | Soybean | cytosol | 6.08 | 21.56 |
| KRH24390 | Soybean | nucleus | 6.71 | 18.13 |
| KRH29371 | Soybean | nucleus | 6.71 | 17.39 |
Protein Annotations
| EntrezGene:100797893 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0R0IF05 | EMBL:ACUP02004749 | EnsemblPlantsGene:GLYMA_08G007700 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH41056 | ProteinID:KRH41056 | ProteinID:KRH41056.1 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0003DE965C | SEG:seg |
Description
hypothetical protein
Coordinates
chr8:-:585211..593581
Molecular Weight (calculated)
104833.0 Da
IEP (calculated)
6.800
GRAVY (calculated)
-0.568
Length
954 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFQIMDQRG VSASSHYFDD ISFRSERNVG LRKPKSINDH YPQGNNGMVA SPGNILNATP PLDVNAKAGL LLPQASLPGD NIHSTESSNY RTKSLSNACL
101: QSAPTSYGLI GNKIVTNAAP FESSLFSSSM SEIFSQKLRF FGNDVRSDHP ITAGSPPKEE PYKSLEEMEA DTIGNLLPDE DDLFSGVVDE LGCSSHARTN
201: DDFEDFDLFS SGGGMEMEGD EHLSSGKRMS ALDGDFGFFG SSKGKLPLVE QPSRTLFVRN INSNVEDSEL KALFEQYGDI RTIYTASKHR GFVMISYQDL
301: RAAQNAMQAL QNRPLGSRKL DIHYSIPKVN APEKDIGHGT LMLSGLDSPV LNDELKQIFG FYGEIKEIYE YSEMNNHKFI EFYDVRAAEA ALRALNKIDI
401: AGKQIKLEPG HPRFETCLMH QSQKGQEERD LGQSIIDNLS LRQKATLPSG VIGSGCLENG YNQRFQSTVR QPLNAFMDNA FIHVNSGIHN TVRGAPAGKV
501: SSVCESSNFV DAMKFASGSR FHPHSLPEYR DSLANGSPYN FSSSISNMAN NIGAGATEAS DGRHIQGMGS TGNLAEFNAG GNGIRPHQGL YHMWNSSNLQ
601: QQPSSSTMLW QKSPSFVNDA SSPGLPQMSS FARTPPHMLR TPHMMDHHVG SAPVVTASPW ERQNSYLGGS PEASGFRLGS LGSGGFHGSW QMHPLDFPSH
701: NMFSHVGGNG TELTTNAGQN SPKQLSHVFP VRHPMSSMSK FDASNERMRN LYHRKNEAST NNVDKKLYEL DLGRILRGED SRTTLMIKNI PNKYTSKMLL
801: AAIDEQCKGT YDFLYLPIDF KNKCNVGYAF INMIDPGQII PFHQAFDGKK WEKFNSEKVA SLAYARIQGK GSLIAHFQNS SLMNEDKRCR PILFHTDGPN
901: AGDPEPFPMG ANIRLRPGKS RTAGNEENRS QGSPSTLSSG EESANGIDSS KISN
101: QSAPTSYGLI GNKIVTNAAP FESSLFSSSM SEIFSQKLRF FGNDVRSDHP ITAGSPPKEE PYKSLEEMEA DTIGNLLPDE DDLFSGVVDE LGCSSHARTN
201: DDFEDFDLFS SGGGMEMEGD EHLSSGKRMS ALDGDFGFFG SSKGKLPLVE QPSRTLFVRN INSNVEDSEL KALFEQYGDI RTIYTASKHR GFVMISYQDL
301: RAAQNAMQAL QNRPLGSRKL DIHYSIPKVN APEKDIGHGT LMLSGLDSPV LNDELKQIFG FYGEIKEIYE YSEMNNHKFI EFYDVRAAEA ALRALNKIDI
401: AGKQIKLEPG HPRFETCLMH QSQKGQEERD LGQSIIDNLS LRQKATLPSG VIGSGCLENG YNQRFQSTVR QPLNAFMDNA FIHVNSGIHN TVRGAPAGKV
501: SSVCESSNFV DAMKFASGSR FHPHSLPEYR DSLANGSPYN FSSSISNMAN NIGAGATEAS DGRHIQGMGS TGNLAEFNAG GNGIRPHQGL YHMWNSSNLQ
601: QQPSSSTMLW QKSPSFVNDA SSPGLPQMSS FARTPPHMLR TPHMMDHHVG SAPVVTASPW ERQNSYLGGS PEASGFRLGS LGSGGFHGSW QMHPLDFPSH
701: NMFSHVGGNG TELTTNAGQN SPKQLSHVFP VRHPMSSMSK FDASNERMRN LYHRKNEAST NNVDKKLYEL DLGRILRGED SRTTLMIKNI PNKYTSKMLL
801: AAIDEQCKGT YDFLYLPIDF KNKCNVGYAF INMIDPGQII PFHQAFDGKK WEKFNSEKVA SLAYARIQGK GSLIAHFQNS SLMNEDKRCR PILFHTDGPN
901: AGDPEPFPMG ANIRLRPGKS RTAGNEENRS QGSPSTLSSG EESANGIDSS KISN
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.