Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G149200.2 | |
| TraesCS5B01G147900.4 | |
| TraesCS5D01G143600.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | TraesCS5A01G149200.2 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | TraesCS5B01G147900.4 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | TraesCS5D01G143600.3 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G002500.1 | Wheat | nucleus | 96.26 | 95.95 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 96.79 | 93.5 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 58.65 | 92.58 |
| Os05t0102800-01 | Rice | nucleus | 68.48 | 67.12 |
| OQU77194 | Sorghum | plastid | 56.09 | 64.18 |
| Zm00001d035763_P003 | Maize | plastid | 63.89 | 63.08 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.2 | 52.73 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 43.27 | 40.91 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 43.06 | 40.38 |
| TraesCS2B01G304600.1 | Wheat | nucleus | 39.42 | 39.98 |
| PGSC0003DMT400005752 | Potato | nucleus | 39.96 | 38.32 |
| Solyc05g023740.2.1 | Tomato | nucleus | 39.53 | 38.07 |
| CDY30686 | Canola | nucleus | 21.47 | 37.92 |
| KRH59735 | Soybean | nucleus | 38.03 | 37.55 |
| KRH41056 | Soybean | nucleus | 38.03 | 37.32 |
| CDX98985 | Canola | nucleus | 34.94 | 36.95 |
| Bra009274.1-P | Field mustard | nucleus | 34.83 | 36.84 |
| CDX70025 | Canola | nucleus | 34.83 | 36.71 |
| Bra010044.1-P | Field mustard | nucleus | 35.9 | 36.68 |
| Bra029297.1-P | Field mustard | nucleus | 34.83 | 36.55 |
| AT5G61960.1 | Thale cress | nucleus | 35.58 | 36.39 |
| CDY30687 | Canola | nucleus | 33.23 | 36.37 |
| KRH45198 | Soybean | nucleus | 28.31 | 35.91 |
| CDX86947 | Canola | nucleus | 34.83 | 35.86 |
| AT5G07290.1 | Thale cress | nucleus | 34.62 | 35.72 |
| CDY00238 | Canola | nucleus | 34.83 | 35.67 |
| KRH63864 | Soybean | nucleus | 36.75 | 35.43 |
| KRH54096 | Soybean | nucleus | 36.22 | 35.06 |
| CDY72437 | Canola | nucleus | 7.48 | 27.89 |
| TraesCS3B01G447800.1 | Wheat | nucleus | 14.42 | 19.97 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 6.3 | 18.73 |
| TraesCS6B01G159300.2 | Wheat | plastid | 6.94 | 15.85 |
| TraesCS5B01G319500.1 | Wheat | plastid | 6.2 | 14.76 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1B01G008000 | EnsemblPlants:TraesCS1B01G008000.1 | TIGR:cd12524 | TIGR:cd12531 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:4345556..4350963
Molecular Weight (calculated)
101365.0 Da
IEP (calculated)
6.775
GRAVY (calculated)
-0.537
Length
936 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIASGVIDR GHLSSFGGPP PDSSSSSFFS EDLVPTERQV GFWKSESMVD QRGSKPAFAS PLEKIHPMGA NPEGGLEQTG GQVFKGLDAL RVSKAMGQGN
101: ASTSPSASWG DMLTTPGSRF GLSAREAAIA ETASGNSRIM ATGVCGQSAD ALSFICEGDE ALGSMEEVEA QTIGDLLPTD DDLISGVIDG FELSGLSINQ
201: DDADEDIFGT GGGMELENDD SISVKGARNL EGSSKCHFPG EHHINKCPSR TLFVTNINTN VLDSDLRVLF QQYGDVHKLY TCKEHGYVTV SYYDIRSAQN
301: AMRALHGKPL GLVKLDVQFC IPKGNASDKD MSKGILVVSN IDPSVSNDDL LQALTVYGDV KEICRASTSC NKKLVEFYDV RAAEAALYDL NKGAISGPKI
401: KAEVSNPGGT IFGLRQQYPR EWKLDGSPRQ PRNSPPGIIG GPKSHENSNL HNLFSPVSPQ LDRSPHGIAS SGPQKLSSPI RIEPTRQYNN QAAIGELGGS
501: LGQGNFGQGM QMFHPHSLPE SQNGICNISK SMTSSGRSAG FRVDGVDYSH LQKVGSGSLH GHSFDQNNEA FGPAGVGSFP LNGHHYSWNN SNAFPQSPSS
601: PMLWSNVQHP GPMHGYPGVV PPHSLNNGAY PMDQHHMGSA PNNGGSFRNA RSVHPGSLGS VGFPGSPQMY ASDVPVFAPA RGSYRETMFS PVGAGFPSLQ
701: QMCNAMSRRN PMVQVSASYD ATNDRMRSRR HDGNAVQPEN KRLFELDIER IAKGEDPRTT LMIKNIPNKY NCKLLLGVID ENHRGTYDFV YLPIDFKNKC
801: NVGYAFINMT DPQHIIPFYK TFNGKRWEKF NSEKVATLAY ARIQGRNELV SHFRNSSLMN EDKWCRPILF HKDGPNAGEQ EPFPVGNNIR PRSGRNRPLH
901: SADTRGDASL STSPNQENSS HRANAAAEGD DSIFAH
101: ASTSPSASWG DMLTTPGSRF GLSAREAAIA ETASGNSRIM ATGVCGQSAD ALSFICEGDE ALGSMEEVEA QTIGDLLPTD DDLISGVIDG FELSGLSINQ
201: DDADEDIFGT GGGMELENDD SISVKGARNL EGSSKCHFPG EHHINKCPSR TLFVTNINTN VLDSDLRVLF QQYGDVHKLY TCKEHGYVTV SYYDIRSAQN
301: AMRALHGKPL GLVKLDVQFC IPKGNASDKD MSKGILVVSN IDPSVSNDDL LQALTVYGDV KEICRASTSC NKKLVEFYDV RAAEAALYDL NKGAISGPKI
401: KAEVSNPGGT IFGLRQQYPR EWKLDGSPRQ PRNSPPGIIG GPKSHENSNL HNLFSPVSPQ LDRSPHGIAS SGPQKLSSPI RIEPTRQYNN QAAIGELGGS
501: LGQGNFGQGM QMFHPHSLPE SQNGICNISK SMTSSGRSAG FRVDGVDYSH LQKVGSGSLH GHSFDQNNEA FGPAGVGSFP LNGHHYSWNN SNAFPQSPSS
601: PMLWSNVQHP GPMHGYPGVV PPHSLNNGAY PMDQHHMGSA PNNGGSFRNA RSVHPGSLGS VGFPGSPQMY ASDVPVFAPA RGSYRETMFS PVGAGFPSLQ
701: QMCNAMSRRN PMVQVSASYD ATNDRMRSRR HDGNAVQPEN KRLFELDIER IAKGEDPRTT LMIKNIPNKY NCKLLLGVID ENHRGTYDFV YLPIDFKNKC
801: NVGYAFINMT DPQHIIPFYK TFNGKRWEKF NSEKVATLAY ARIQGRNELV SHFRNSSLMN EDKWCRPILF HKDGPNAGEQ EPFPVGNNIR PRSGRNRPLH
901: SADTRGDASL STSPNQENSS HRANAAAEGD DSIFAH
001: MRGVSTPSHF HEDIHITSER QFGFMKTDMM PENQGGRDRL SSMPKSSWTS ESYQLKPQSS FSGSHPSGSP NARNTTNGSQ WESSLFSSSM SDLFSRKLRL
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.