Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001342.1-P | |
| Bra029726.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | Bra001342.1-P | AT3G08850.1 | 15720729 |
| AT5G61960.1 | Bra029726.1-P | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00238 | Canola | nucleus | 98.47 | 98.69 |
| CDX86947 | Canola | nucleus | 96.72 | 97.47 |
| Bra029297.1-P | Field mustard | nucleus | 85.92 | 88.23 |
| AT5G61960.1 | Thale cress | nucleus | 86.46 | 86.56 |
| Bra009274.1-P | Field mustard | nucleus | 69.76 | 72.2 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 7.31 | 60.91 |
| KRH59735 | Soybean | nucleus | 46.62 | 45.04 |
| KRH41056 | Soybean | nucleus | 46.72 | 44.86 |
| KRH63864 | Soybean | nucleus | 46.72 | 44.08 |
| KRH54096 | Soybean | nucleus | 45.74 | 43.33 |
| Bra013285.1-P | Field mustard | nucleus | 28.28 | 39.01 |
| Bra030135.1-P | Field mustard | nucleus | 31.22 | 38.86 |
| Bra032316.1-P | Field mustard | nucleus | 33.08 | 38.26 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 24.67 | 38.11 |
| Os05t0102800-01 | Rice | nucleus | 38.43 | 36.86 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 36.68 | 35.9 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 36.57 | 35.68 |
| Zm00001d035763_P003 | Maize | plastid | 36.46 | 35.23 |
| Bra004728.1-P | Field mustard | nucleus | 28.17 | 35.01 |
| Bra000279.1-P | Field mustard | nucleus | 29.69 | 34.56 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 35.92 | 33.95 |
| OQU77194 | Sorghum | plastid | 29.8 | 33.37 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 6.99 | 22.86 |
| Bra004255.1-P | Field mustard | plastid | 12.88 | 21.45 |
| Bra036347.1-P | Field mustard | plastid | 12.45 | 20.96 |
| Bra025185.1-P | Field mustard | nucleus | 13.43 | 20.23 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 5.13 | 19.67 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EnsemblPlantsGene:Bra010044 | EnsemblPlants:Bra010044.1 | EnsemblPlants:Bra010044.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M4D0P5 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000253EED6 | SEG:seg | : | : | : |
Description
AT5G61960 (E=0.0) AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding
Coordinates
chrA06:-:18808900..18813476
Molecular Weight (calculated)
101321.0 Da
IEP (calculated)
7.093
GRAVY (calculated)
-0.600
Length
916 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDIMEQRG VSTPSHFRED TRISSERQFG FLKTDLIPEN QGGRDRFSNL PKSSWTPESH QLKPQSSLSG VHPSVSPNAR NTTNGSQWES SLFSSSLSDT
101: FSRKLRLQRS DMLSPMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVMGDVG RKSRAGGDDL DDFDLFSSVG GMELDGDVFP PMGPRNGERG
201: RNNSVGEHHR AEIPSRTILA GNISSNVEDY ELKVLFEQFG DIQALHTACK NRGFIMVSYY DIRAAQNAAR ALHNKLLRGT KLDIRYSIPK EIPSGKDASK
301: GALLITNIDS SISNEELNRM VKSYGEIKEI RRTMHDNPQI YIEFFDIRAS EAALGGLNGL EVAGKQLKLA LTYPESQRYM SQFVAHDAEG FLPKMPFTNT
401: SSGHMGRHFP GIIPSTSIDG GPMGISHSSV GSPVNSFIER HRSLSIPIGF PPSANVISAS KPGIQEHVHP FDNSNMGIQS MPNLHPHSFS EYLDNFTNGS
501: PYKSSTAFSE VVSDGSKAND AFMLHNVRGV DGFNGGGIGS PMNQNSRRPN LNLWSNSNTQ QQNPSGGMMW PSSPSHLNGI TSQRPPVTVF SRAPPVMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESPGFHIGS HGSMGFPGSS PSHPMEIGSH KSFSHVAGNR MDINSQNAVL RSPQQLSHLF PGRNPMVSMP
701: GSFDSPNERY RNLSHRRSES SSSHADKKLF ELDVDRILRG DDVRTTLMLK NIPNKYTSKM LLSAIDEHCK GTYDFLYLPI DFKNKCNVGY AFINLIEPEK
801: IVPFYKAFNG KKWEKFNSEK VATLTYARIQ GKVALIAHFQ NSSLMNEDKR CRPILFHTDG PNAGDQEPFP MGTNIRSRPG KPRSSSIDNH NSFSIASVSE
901: NREEPPNGTD PFLKEN
101: FSRKLRLQRS DMLSPMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVMGDVG RKSRAGGDDL DDFDLFSSVG GMELDGDVFP PMGPRNGERG
201: RNNSVGEHHR AEIPSRTILA GNISSNVEDY ELKVLFEQFG DIQALHTACK NRGFIMVSYY DIRAAQNAAR ALHNKLLRGT KLDIRYSIPK EIPSGKDASK
301: GALLITNIDS SISNEELNRM VKSYGEIKEI RRTMHDNPQI YIEFFDIRAS EAALGGLNGL EVAGKQLKLA LTYPESQRYM SQFVAHDAEG FLPKMPFTNT
401: SSGHMGRHFP GIIPSTSIDG GPMGISHSSV GSPVNSFIER HRSLSIPIGF PPSANVISAS KPGIQEHVHP FDNSNMGIQS MPNLHPHSFS EYLDNFTNGS
501: PYKSSTAFSE VVSDGSKAND AFMLHNVRGV DGFNGGGIGS PMNQNSRRPN LNLWSNSNTQ QQNPSGGMMW PSSPSHLNGI TSQRPPVTVF SRAPPVMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESPGFHIGS HGSMGFPGSS PSHPMEIGSH KSFSHVAGNR MDINSQNAVL RSPQQLSHLF PGRNPMVSMP
701: GSFDSPNERY RNLSHRRSES SSSHADKKLF ELDVDRILRG DDVRTTLMLK NIPNKYTSKM LLSAIDEHCK GTYDFLYLPI DFKNKCNVGY AFINLIEPEK
801: IVPFYKAFNG KKWEKFNSEK VATLTYARIQ GKVALIAHFQ NSSLMNEDKR CRPILFHTDG PNAGDQEPFP MGTNIRSRPG KPRSSSIDNH NSFSIASVSE
901: NREEPPNGTD PFLKEN
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.