Factsheet for Bra004255.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56219	Canola	plastid	92.73	96.96
AT1G67770.1	Thale cress	plastid	60.36	63.0
KRH31364	Soybean	cytosol, nucleus	17.09	54.34
Bra036347.1-P	Field mustard	plastid	42.73	43.2
KRG97510	Soybean	nucleus	41.45	42.3
Bra025185.1-P	Field mustard	nucleus	45.45	41.12
Solyc05g013930.1.1	Tomato	nucleus	47.09	40.85
PGSC0003DMT400027957	Potato	nucleus	35.45	40.29
VIT_14s0219g00270.t01	Wine grape	plastid	39.82	39.18
VIT_01s0137g00320.t01	Wine grape	nucleus	45.27	37.84
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	34.36	37.43
KRH31365	Soybean	nucleus	21.09	35.69
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.73	35.19
Bra035509.1-P	Field mustard	cytosol, plastid	13.82	31.8
Zm00001d042445_P001	Maize	nucleus	38.36	31.78
GSMUA_Achr8P32080_001	Banana	nucleus	39.82	31.69
HORVU3Hr1G091930.1	Barley	nucleus	38.73	31.46
TraesCS3B01G447800.1	Wheat	nucleus	38.55	31.36
TraesCS3A01G413400.1	Wheat	nucleus	38.73	31.32
Os01t0907900-01	Rice	nucleus	38.55	31.04
TraesCS3D01G407900.1	Wheat	nucleus	38.18	30.75
EES01930	Sorghum	nucleus	37.09	30.63
Bra028677.1-P	Field mustard	nucleus, plastid	14.55	28.57
Bra013285.1-P	Field mustard	nucleus	24.18	20.03
Bra030135.1-P	Field mustard	nucleus	23.45	17.53
Bra004728.1-P	Field mustard	nucleus	23.09	17.23
Bra032316.1-P	Field mustard	nucleus	24.55	17.05
Bra000279.1-P	Field mustard	nucleus	22.91	16.01
Bra009274.1-P	Field mustard	nucleus	22.73	14.12
Bra029297.1-P	Field mustard	nucleus	22.36	13.79
Bra010044.1-P	Field mustard	nucleus	21.45	12.88

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra004255	EnsemblPlants:Bra004255.1	EnsemblPlants:Bra004255.1-P	InterPro:EAR1_like_RRM3
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4CJ71	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000254166E	SEG:seg	:	:	:	:

Description

AT1G67770 (E=1e-075) TEL2 | TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA07:+:17672459..17674623

Molecular Weight (calculated)

62252.7 Da

IEP (calculated)

9.460

GRAVY (calculated)

-0.460

Length

550 amino acids

Sequence
(BLAST)

001: MSQTGYPGHL NPTAPMFLPA NLNPVPFFIP TRIYFPHPLP PPPPPPPPYP RFFSCFAGPL PPAPPPHLPP SLSIPTRTLV LLPVPADVSE SSIRRDLEVF
101: GEVRGVQMER AHEGIVTVHF YDLRHSRTAL REIRERHMHQ QQVRFGRGYT AARGLVSGRT VWAHFVFPHF RAVPEGNNQG SLVIMNLEPT VSSAALRQIF
201: EAYGEVKELR DTPFKREQRF VEFYDVRDAA LARREMDGKA IDGKPIIVQF SRPGGFNKKL ILASRFNKSF LSNIHHPLPP PPHFRRQVPS PASQLRRGGP
301: VKGKPVKPNF SSGDTDRYEQ NKRRPKMHTT TKNSIIDTRF TIHVDAIAES RDGRTTVMIK NIPNKYTQKL LLDMLDAHCN DCNEEIVSEG NQTPMSSYDF
401: VYLPIDFGNK CNVGYGFVNM TTPEAVWRLY KAFHNNHWRL FQSSKICEVT YARVQGLESL KEHFKHLKLP CVEMEYKPVI FSPARDGRLM TKPIAIVVDL
501: GTRPVEDSCP SRAETVTSCS FSIERSDGWL GERTEDGGVS DDEGETVVKI

Best Arabidopsis Sequence Match ( AT1G67770.1 )
(BLAST)

001: MSVTGPFSHP TNLNPTAPAF FPAINQHQNQ NPSLIPTRFF LPHPPPPPPP PPPPLYFSYF SLPPPPPPPH LPPTSVTPTR AVMLLQVPAT VTETSLRRDM
101: ELFGEVRGVQ MERAHEGIVI FHFYNLINSQ RAFNEIRYRH MQQQEQQQHF HFTTARGLVS GHSLWAHFVF PQLNAVPEGN NQGSLVIMNL EPTVSSSTLR
201: HIFQVYGEVK QVRETPCKRE QRFVEFFDVR DAAKALRVMN GKVISGKPMV IQFSRPGGLT KKLFFASHFH KNFIFNNEHH YYPPPPPPSR MVKSDILMYK
301: QQQKKKKKKY VKKNLGDPYF MINENAITGG EFRDGRTTVM IKNIPNKYTQ KLLLKMLDTH CKDCNQSVIK EGNKTPMSSY DFVYLPIDFS NKSNVGYGFV
401: NMTSPEAVWR LYKSFHNQHW RDFTTTRKIC EVTYARIQGL ESLREHFKNV RLAGVEIDEY MPVVFSPPRD GRLSPEPVAI VDPWDKPVDD EDRCCKSRDG
501: FVVSDKKMVG SDGCGFCLSE RIENGGV

Arabidopsis Description

TEL2F12A21.10 [Source:UniProtKB/TrEMBL;Acc:Q9FXE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.