Factsheet for TraesCS3D01G407900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G447800.1	Wheat	nucleus	95.61	96.6
TraesCS3A01G413400.1	Wheat	nucleus	95.02	95.44
HORVU3Hr1G091930.1	Barley	nucleus	89.02	89.81
Os01t0907900-01	Rice	nucleus	67.2	67.2
Zm00001d042445_P001	Maize	nucleus	60.91	62.65
KRH31364	Soybean	cytosol, nucleus	15.67	61.85
EES01930	Sorghum	nucleus	59.74	61.26
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	35.43	47.92
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	35.29	41.99
CDY01848	Canola	plastid	30.01	40.84
GSMUA_Achr8P32080_001	Banana	nucleus	40.56	40.09
KRG97510	Soybean	nucleus	31.63	40.07
Solyc05g013930.1.1	Tomato	nucleus	36.6	39.43
CDY56219	Canola	plastid	30.01	38.97
VIT_14s0219g00270.t01	Wine grape	plastid	31.48	38.46
Bra004255.1-P	Field mustard	plastid	30.75	38.18
Bra036347.1-P	Field mustard	plastid	30.16	37.87
AT1G67770.1	Thale cress	plastid	28.99	37.57
VIT_01s0137g00320.t01	Wine grape	nucleus	36.16	37.54
CDX83589	Canola	nucleus	31.33	36.83
CDX99727	Canola	nucleus	32.36	36.65
CDY40990	Canola	nucleus	32.36	36.11
CDY13612	Canola	nucleus	31.63	35.53
AT3G26120.1	Thale cress	nucleus	31.92	35.45
Bra025185.1-P	Field mustard	nucleus	31.48	35.36
PGSC0003DMT400027957	Potato	nucleus	24.6	34.71
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	12.01	32.67
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	13.32	28.53
KRH31365	Soybean	nucleus	13.47	28.31
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	13.76	28.23
TraesCS2D01G286200.6	Wheat	nucleus	20.94	15.48
TraesCS7D01G003000.1	Wheat	plastid	19.62	15.4
TraesCS1D01G002500.1	Wheat	nucleus	19.47	14.16

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS3D01G407900	EnsemblPlants:TraesCS3D01G407900.1	TIGR:cd12276	TIGR:cd12530	SEG:seg

Description

No Description!

Coordinates

chr3D:+:521316002..521319570

Molecular Weight (calculated)

73190.2 Da

IEP (calculated)

7.327

GRAVY (calculated)

-0.467

Length

683 amino acids

Sequence
(BLAST)

001: MDGVGGGGAG MAGMPGMPGA PQNILDAGAQ EYYPSAGASY PPPPFLSLPH QLYCPPPLPV MPPPMAMPMP MPMPMPQPQT VAIPPQIGLP VPTAVDGPAS
101: RAVVLSLLPP HTPEFEVARA MAPFGDVRTV DAPALASEGV ATVHFFDLRS AENAVTAVRE QHMRQQCRLS QLYAATTAWP PQPPAWDWQQ DDCRGLVLGQ
201: AVWAHFAAAS TLPDDGANRG SLVVLNSLPD VSLSELRQAF QAYGPLKDVR ESAQRPNHKF VEFFDTRHAA RALAELNGRD FFGHRLILEF TRPSIPGARR
301: RGFVSPRPIV PTPPRLQAAW RPLPSPAKQP SSSTGTGKAR GEVVTTSRCS SKSNAGDRSK GGTTQERKGK GKGGKKATIV VDTTSSSPAS ASEAAATASA
401: SGKQQPQKGV VRVGSWRGPK SWRGGWETRF EFKQPAAAAD SNATTAADSN ATTAADTDTQ EAETRTTVMI RNIPNKYSQK LLLNMLDNHC IEYNKKIDAG
501: EGGGEPFSSY DFLYLPIDFN NKCNVGYGFV NLTTPEAAVR LYKAFHKQPW EVYNSRKICQ VTYARVQGLE ALKDHFKNSK FPCDSDEYLP VVFSPPRDGR
601: QLTEPELLVP RSPIPSPSSP RKGQAAGVDP LALELMAPPS SSGDGASSTM STHADEDVQG ASGSNDDDDG GLGEELQRLG YTD

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.