CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025185.1-P	Field mustard	nucleus	99.51	99.51
CDX83589	Canola	nucleus	91.78	96.04
CDX99727	Canola	nucleus	79.28	79.93
CDY40990	Canola	nucleus	79.77	79.25
AT3G26120.1	Thale cress	nucleus	79.11	78.21
KRH31364	Soybean	cytosol, nucleus	16.78	58.96
CDY01848	Canola	plastid	41.78	50.6
CDY56219	Canola	plastid	40.79	47.15
KRG97510	Soybean	nucleus	38.82	43.78
Solyc05g013930.1.1	Tomato	nucleus	45.56	43.69
PGSC0003DMT400027957	Potato	nucleus	33.22	41.74
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	33.88	40.79
VIT_14s0219g00270.t01	Wine grape	plastid	37.34	40.61
VIT_01s0137g00320.t01	Wine grape	nucleus	43.91	40.58
KRH31365	Soybean	nucleus	20.23	37.85
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	35.53	37.63
EES01930	Sorghum	nucleus	37.5	34.23
Zm00001d042445_P001	Maize	nucleus	36.51	33.43
GSMUA_Achr8P32080_001	Banana	nucleus	37.83	33.29
Os01t0907900-01	Rice	nucleus	36.68	32.65
CDY44647	Canola	nucleus, plastid	12.66	32.22
TraesCS3B01G447800.1	Wheat	nucleus	35.69	32.1
HORVU3Hr1G091930.1	Barley	nucleus	35.36	31.76
TraesCS3D01G407900.1	Wheat	nucleus	35.53	31.63
TraesCS3A01G413400.1	Wheat	nucleus	35.03	31.32
CDY62093	Canola	nucleus, plastid	12.83	31.2
CDY14020	Canola	plastid	12.99	28.21
CDY40768	Canola	nucleus	12.66	25.5
CDY61671	Canola	nucleus	23.68	21.69
CDX78826	Canola	nucleus	23.52	21.5
CDY15631	Canola	nucleus	23.36	19.29
CDX94663	Canola	nucleus	22.7	18.72
CDY48336	Canola	nucleus	23.19	18.24
CDX99820	Canola	nucleus	23.36	17.93
CDX79841	Canola	nucleus	22.2	17.42
CDX83512	Canola	nucleus	22.37	17.28
CDY42812	Canola	nucleus	22.04	16.9
CDY60197	Canola	endoplasmic reticulum, plasma membrane	22.04	16.58
CDY42813	Canola	nucleus	22.2	16.52
CDY30687	Canola	nucleus	20.72	14.74
CDX70025	Canola	nucleus	21.05	14.41
CDX98985	Canola	nucleus	20.89	14.35
CDY30686	Canola	nucleus	11.84	13.58
CDY00238	Canola	nucleus	19.41	12.91
CDX86947	Canola	nucleus	18.91	12.65
CDY71762	Canola	nucleus	2.14	5.42
CDY72437	Canola	nucleus	2.14	5.18

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078FKV6	UniProt:A0A078FKV6	EnsemblPlants:CDY13612	ProteinID:CDY13612
ProteinID:CDY13612.1	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00078024001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF15FD	SEG:seg	:	:

Description

BnaA06g33110DBnaA06g33110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKV6]

Coordinates

chrLK032037:+:238354..240968

Molecular Weight (calculated)

68487.3 Da

IEP (calculated)

7.439

GRAVY (calculated)

-0.555

Length

608 amino acids

Sequence
(BLAST)

001: MENFRAFPFA GNLDPRAQEF VPLNPMSPRF HFPYTSLPPP PLPPPPPSYG LSPSDPRMFT FFNIPPHPMM FPPAPHPPPP PPPPPRPWFN GFSAVQRPSP
101: PSNSPTRSLS LIYVPRDVTE STVRRDLEVF GDVRGVQMER ISEGVVTVHF YDLRGAKRAV REFCGRHMQH QERLGSSSGG GSVWRSPSSS ARGFVSGRPV
201: WAHFVVPDTN AVPGGCNQGT LVIFNLDPEV SSIALRQIFQ VYGSIKELRE TPYKKHQRFI EFYDVRDAVN AFDRMNGEEI YGKQVVIEFS RPGGLKNKFT
301: PFRQPQLPFQ PRPVLLTPPL KQSVILTNGK SKNVSPNNGV DVVEASMRSL CDIDDEAEPE TKSKNVAKLG RKKQMKSMEL SQFLISEETM NDPSCRDPRT
401: TLMIKNIPNK YSQKLLLNML DNHCIHINEA ITEEERDEHK AHHDQPISSY DFVYLPMDFN NKCNVGYGFV NMTSPEAAWR LYKAFHRQRW EIFNSHKICQ
501: ITYARVQGLE DLKEHFRSSR FPCEAELYLP VVFSPPRDGK QLTEPVSINI NDCTGLNNIH HLEPIDGPDH SVGGSCCGSD NDNSQEDGLS GNNIDGGRSF
601: TVVGATSF

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.