Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000279.1-P | Field mustard | nucleus | 98.48 | 98.48 |
| CDY42812 | Canola | nucleus | 95.04 | 94.33 |
| CDY42813 | Canola | nucleus | 93.65 | 90.21 |
| CDX79841 | Canola | nucleus | 79.03 | 80.26 |
| AT2G42890.1 | Thale cress | nucleus | 85.51 | 79.83 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 79.67 | 77.6 |
| CDX78826 | Canola | nucleus | 37.87 | 44.81 |
| CDY61671 | Canola | nucleus | 37.23 | 44.13 |
| CDX94663 | Canola | nucleus | 39.9 | 42.61 |
| CDY15631 | Canola | nucleus | 39.14 | 41.85 |
| CDY48336 | Canola | nucleus | 41.04 | 41.79 |
| CDX99820 | Canola | nucleus | 41.3 | 41.04 |
| CDY30687 | Canola | nucleus | 32.91 | 30.29 |
| CDX98985 | Canola | nucleus | 33.29 | 29.6 |
| CDX70025 | Canola | nucleus | 32.91 | 29.17 |
| CDY00238 | Canola | nucleus | 33.42 | 28.77 |
| CDX86947 | Canola | nucleus | 33.04 | 28.6 |
| CDY30686 | Canola | nucleus | 17.28 | 25.66 |
| CDY01848 | Canola | plastid | 15.88 | 24.9 |
| CDY71762 | Canola | nucleus | 7.5 | 24.58 |
| CDY56219 | Canola | plastid | 16.14 | 24.14 |
| CDX83589 | Canola | nucleus | 16.9 | 22.89 |
| CDY72437 | Canola | nucleus | 7.24 | 22.71 |
| CDY13612 | Canola | nucleus | 17.28 | 22.37 |
| CDY40990 | Canola | nucleus | 17.15 | 22.06 |
| CDX99727 | Canola | nucleus | 16.9 | 22.06 |
| CDY14020 | Canola | plastid | 6.73 | 18.93 |
| CDY40768 | Canola | nucleus | 6.61 | 17.22 |
| CDY44647 | Canola | nucleus, plastid | 5.08 | 16.74 |
| CDY62093 | Canola | nucleus, plastid | 5.21 | 16.4 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078D328 | EnsemblPlants:CDX83512 | ProteinID:CDX83512 | ProteinID:CDX83512.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00139107001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EF2A04 | SEG:seg | : | : | : |
Description
BnaA03g19940D
Coordinates
chrLK031832:-:1877466..1881957
Molecular Weight (calculated)
87211.8 Da
IEP (calculated)
5.917
GRAVY (calculated)
-0.581
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MELESKESLS ADMPSFLRRS AEAFNGGSEY RSATDLSMFS SSLPTLFHEK LNMTDSDSWL SLDDNSPNLN KLVMGNSEKD SLEDVEPHSL EILLPEDENE
101: LLPGLIDELN FSGLPDELED LDVFCTGGGM ELDGESQRDA ASSFVTRKRP NTSGRVSVEH PNGEHPSRTL FVRNINSSID DSELTALFEP FGEIRSLYTA
201: CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DSTVSNDELL KLFGAYGEIR EIRETPNRRF HRFIEYYDVR
301: DAEAALKALN RSEIGGKCIK LELSRPGGAR RVSVPSASQD MDRHEVTSFL ASQVANSPPG NWPIGSPLKG SPTHAFPRPH GLGIIRPFNR DNMPGLASVL
401: PGQTSSFHGF SPVSNDQGLL IHPNQTSLSK GLMHSYPYGQ PHSLPEHIGG GISNSMSFIA PHSPGFGTSS DNRYRWGSPP QHLNYPGASS SSSSPTERPF
501: TVRHGFPFAE RQVSLLGKYQ HHVGSAPSST HFNSYTGSPE TSSLIPLGVG DMGINKSYIN PHGKANLGVS LQGNHNKQDF SGFGMSSLPF GGSRGHEPFA
601: EQGRIQHIDG GQYHIDLDRI ATGDDTRTTL IIKNIPNKYT YKMLVAEIDE KHKGDYDFLC LPIDFKNKCN MGYAFVNMVS PLHIVPFQQT FNGKIWEKFN
701: SGKVASLAYA EIQGKSALAS YMQNPSTMED EKQLFPEVSH HNDEGQDSKD QDRLFSSIWN TTAPDSDWSY RMDINENPRK NIAEESS
101: LLPGLIDELN FSGLPDELED LDVFCTGGGM ELDGESQRDA ASSFVTRKRP NTSGRVSVEH PNGEHPSRTL FVRNINSSID DSELTALFEP FGEIRSLYTA
201: CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DSTVSNDELL KLFGAYGEIR EIRETPNRRF HRFIEYYDVR
301: DAEAALKALN RSEIGGKCIK LELSRPGGAR RVSVPSASQD MDRHEVTSFL ASQVANSPPG NWPIGSPLKG SPTHAFPRPH GLGIIRPFNR DNMPGLASVL
401: PGQTSSFHGF SPVSNDQGLL IHPNQTSLSK GLMHSYPYGQ PHSLPEHIGG GISNSMSFIA PHSPGFGTSS DNRYRWGSPP QHLNYPGASS SSSSPTERPF
501: TVRHGFPFAE RQVSLLGKYQ HHVGSAPSST HFNSYTGSPE TSSLIPLGVG DMGINKSYIN PHGKANLGVS LQGNHNKQDF SGFGMSSLPF GGSRGHEPFA
601: EQGRIQHIDG GQYHIDLDRI ATGDDTRTTL IIKNIPNKYT YKMLVAEIDE KHKGDYDFLC LPIDFKNKCN MGYAFVNMVS PLHIVPFQQT FNGKIWEKFN
701: SGKVASLAYA EIQGKSALAS YMQNPSTMED EKQLFPEVSH HNDEGQDSKD QDRLFSSIWN TTAPDSDWSY RMDINENPRK NIAEESS
001: MVSSIIAVAE GKKMELEPNK SLSADMPSLL SRSSEAFNGG TGYRSSSDLS MFSSSLPTLF HEKLNMTDSD SWLSFDESSP NLNKLVIGNS EKDSLEDVEP
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
Arabidopsis Description
ML2ML2 [Source:UniProtKB/TrEMBL;Acc:A0A178VQK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.