CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00652
CDY27967
CDY64943
CDY67456

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61960.1	CDY00652	AT3G08850.1	15720729
AT5G61960.1	CDY27967	AT3G08850.1	15720729
AT5G61960.1	CDY64943	AT3G08850.1	15720729
AT5G61960.1	CDY67456	AT3G08850.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30687	Canola	nucleus	96.6	59.88
Bra029297.1-P	Field mustard	nucleus	98.3	58.41
AT5G61960.1	Thale cress	nucleus	88.87	51.48
CDY00238	Canola	nucleus	86.98	50.44
CDX86947	Canola	nucleus	86.42	50.38
VIT_00s0239g00110.t01	Wine grape	plastid	10.0	48.18
CDX70025	Canola	nucleus	74.91	44.71
CDX98985	Canola	nucleus	74.15	44.41
HORVU1Hr1G000530.2	Barley	nucleus	36.42	32.55
KRH59735	Soybean	nucleus	48.3	27.0
KRH41056	Soybean	nucleus	48.11	26.73
KRH63864	Soybean	nucleus	46.79	25.54
KRH54096	Soybean	nucleus	45.66	25.03
OQU77194	Sorghum	plastid	38.49	24.94
Zm00001d035763_P003	Maize	plastid	40.38	22.57
Os05t0102800-01	Rice	nucleus	40.0	22.2
CDX94663	Canola	nucleus	30.0	21.57
TraesCS1B01G008000.1	Wheat	nucleus	37.92	21.47
CDX78826	Canola	nucleus	26.79	21.35
TraesCS1D01G002500.1	Wheat	nucleus	37.74	21.3
CDY15631	Canola	nucleus	29.25	21.06
CDY48336	Canola	nucleus	30.57	20.96
CDX99820	Canola	nucleus	31.13	20.83
CDY14020	Canola	plastid	10.94	20.71
CDY61671	Canola	nucleus	25.85	20.63
TraesCS1A01G005800.2	Wheat	nucleus	36.98	20.23
CDY62093	Canola	nucleus, plastid	9.06	19.2
CDY40768	Canola	nucleus	10.75	18.87
CDY44647	Canola	nucleus, plastid	8.49	18.83
CDX83512	Canola	nucleus	25.66	17.28
CDY42812	Canola	nucleus	25.85	17.28
CDY42813	Canola	nucleus	24.72	16.03
CDY60197	Canola	endoplasmic reticulum, plasma membrane	24.34	15.97
CDX79841	Canola	nucleus	23.21	15.87
CDY01848	Canola	plastid	13.77	14.54
CDY56219	Canola	plastid	13.58	13.69
CDX99727	Canola	nucleus	13.77	12.11
CDX83589	Canola	nucleus	13.21	12.05
CDY40990	Canola	nucleus	13.77	11.93
CDY13612	Canola	nucleus	13.58	11.84
CDY72437	Canola	nucleus	1.89	3.98
CDY71762	Canola	nucleus	0.57	1.25

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078GYV8	UniProt:A0A078GYV8	EnsemblPlants:CDY30686	ProteinID:CDY30686
ProteinID:CDY30686.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00046017001	InterPro:IPR012677
InterPro:MEI2-like_RRM3	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF04059	PANTHER:PTHR44127	PANTHER:PTHR44127:SF6
InterPro:RBD_domain_sf	SUPFAM:SSF54928	UniParc:UPI0004EEB093	SEG:seg	:	:

Description

BnaA02g33080DBnaA02g33080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYV8]

Coordinates

chrLK032258:-:12652..15530

Molecular Weight (calculated)

58360.5 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.638

Length

530 amino acids

Sequence
(BLAST)

001: MRLSLMWLQN GYMQDAEGCL PKLAFTNTSS GNMGRHFPGL ISSTSIDGGS MRVSHSSVGS PVNSFIERHR SLSIPIGFQP PANVISASKP VGVQEHGHSF
101: DNTNMGIQSM PNLHPHSFSE YVDNFANGGS PYKSSAANEG FMLHNVRGVD GFNGGGVGSP MSQSSRRPNP NLWSNSNTQQ HNPSSGMMWP NSPSHINSIP
201: TQRPPVTVFS RAPPIMVNMA SSPVHHHIGS APVLNSPFWD RRQAYVAESL ESPGFHIGSH GSMGFPGSSP SRPMEIGSHK SFSHVVGNRM DVNSPNAVLR
301: SPQQLSHLFP GRSPMGSMPG SYDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGD DNRTTLMVKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID
401: FKNKCNVGYA FINLTEPEKI VPFYKAFNGK KWEKFNSEKV ATLTYARIQG KVALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GTNIRSRPGK
501: PRSSSTDNYN SFSIASASEN REEPPNGTEN

Best Arabidopsis Sequence Match ( AT5G61960.1 )
(BLAST)

001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN

Arabidopsis Description

ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.