Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | CDY00652 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY27967 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY64943 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY67456 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71762 | Canola | nucleus | 89.24 | 93.33 |
| CDY30687 | Canola | nucleus | 78.88 | 23.16 |
| CDX86947 | Canola | nucleus | 81.67 | 22.55 |
| CDY00238 | Canola | nucleus | 81.27 | 22.32 |
| AT5G61960.1 | Thale cress | nucleus | 80.48 | 22.08 |
| CDX98985 | Canola | nucleus | 53.78 | 15.25 |
| CDX70025 | Canola | nucleus | 52.19 | 14.75 |
| KRH63864 | Soybean | nucleus | 43.43 | 11.23 |
| KRH54096 | Soybean | nucleus | 42.23 | 10.96 |
| KRH59735 | Soybean | nucleus | 41.04 | 10.87 |
| KRH41056 | Soybean | nucleus | 41.04 | 10.8 |
| CDY48336 | Canola | nucleus | 26.69 | 8.67 |
| CDX99820 | Canola | nucleus | 26.69 | 8.46 |
| CDY15631 | Canola | nucleus | 24.3 | 8.29 |
| Os05t0102800-01 | Rice | nucleus | 29.48 | 7.75 |
| CDX94663 | Canola | nucleus | 22.71 | 7.73 |
| CDX79841 | Canola | nucleus | 23.51 | 7.61 |
| CDY61671 | Canola | nucleus | 19.92 | 7.53 |
| CDX78826 | Canola | nucleus | 19.92 | 7.52 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 27.89 | 7.48 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 27.89 | 7.45 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 23.9 | 7.43 |
| CDX83512 | Canola | nucleus | 22.71 | 7.24 |
| OQU77194 | Sorghum | plastid | 23.11 | 7.09 |
| CDY42812 | Canola | nucleus | 22.31 | 7.06 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 27.09 | 7.02 |
| Zm00001d035763_P003 | Maize | plastid | 26.29 | 6.96 |
| CDY42813 | Canola | nucleus | 22.31 | 6.85 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 1.59 | 3.64 |
| CDY56219 | Canola | plastid | 5.58 | 2.66 |
| CDY40768 | Canola | nucleus | 3.19 | 2.65 |
| CDY01848 | Canola | plastid | 5.18 | 2.59 |
| CDY14020 | Canola | plastid | 2.79 | 2.5 |
| CDX83589 | Canola | nucleus | 5.18 | 2.24 |
| CDY13612 | Canola | nucleus | 5.18 | 2.14 |
| CDY40990 | Canola | nucleus | 4.78 | 1.96 |
| CDY30686 | Canola | nucleus | 3.98 | 1.89 |
| CDX99727 | Canola | nucleus | 4.38 | 1.82 |
| CDY44647 | Canola | nucleus, plastid | 1.2 | 1.26 |
| CDY62093 | Canola | nucleus, plastid | 1.2 | 1.2 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 1.2 | 0.51 |
Protein Annotations
| EnsemblPlants:CDY72437 | EnsemblPlantsGene:GSBRNA2T00029664001 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | ProteinID:CDY72437 | ProteinID:CDY72437.1 |
| SEG:seg | UniParc:UPI0004EF4242 | UniProt:A0A078K3G6 | MapMan:35.1 | : | : |
Description
BnaAnng41140DBnaAnng41140D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K3G6]
Coordinates
chrLK051020:-:2..1875
Molecular Weight (calculated)
27760.1 Da
IEP (calculated)
4.294
GRAVY (calculated)
-0.525
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDVMEQGG VSTPSHFRED IRLTSERQFG FLKTDTMSEN QGGRLPKSSW TPESYQLKPQ SSLSGVHSSL SPNAKTTTSD SQWESSLFSS SLSDIFTRKL
101: RLQGSNMLSP MSGNTAVAHR EEEPSETLEE IEAQTIGNLL PDEDDLFAEV MGEVGLKSRS NGDDLDDFDL FSSVGGMELD GDVFSSVGHR NGERGSNNSV
201: GELRRGEIPS RTILAGNIGS NVEDYELKVL FEVPYFIRVY DSLFRSYMVL F
101: RLQGSNMLSP MSGNTAVAHR EEEPSETLEE IEAQTIGNLL PDEDDLFAEV MGEVGLKSRS NGDDLDDFDL FSSVGGMELD GDVFSSVGHR NGERGSNNSV
201: GELRRGEIPS RTILAGNIGS NVEDYELKVL FEVPYFIRVY DSLFRSYMVL F
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.