Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15631 | Canola | nucleus | 92.27 | 92.39 |
| CDY48336 | Canola | nucleus | 85.21 | 81.24 |
| CDX99820 | Canola | nucleus | 85.75 | 79.8 |
| AT1G29400.3 | Thale cress | nucleus | 81.14 | 74.75 |
| CDX78826 | Canola | nucleus | 53.6 | 59.4 |
| CDY61671 | Canola | nucleus | 53.32 | 59.19 |
| CDX83512 | Canola | nucleus | 42.61 | 39.9 |
| CDY42812 | Canola | nucleus | 42.06 | 39.09 |
| CDX79841 | Canola | nucleus | 40.98 | 38.97 |
| CDY42813 | Canola | nucleus | 42.33 | 38.19 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 40.71 | 37.13 |
| CDY30687 | Canola | nucleus | 38.26 | 32.98 |
| CDX98985 | Canola | nucleus | 38.53 | 32.09 |
| CDX70025 | Canola | nucleus | 37.72 | 31.31 |
| CDY00238 | Canola | nucleus | 37.99 | 30.63 |
| CDX86947 | Canola | nucleus | 37.58 | 30.47 |
| CDY30686 | Canola | nucleus | 21.57 | 30.0 |
| CDY01848 | Canola | plastid | 17.91 | 26.29 |
| CDY71762 | Canola | nucleus | 8.28 | 25.42 |
| CDY56219 | Canola | plastid | 17.37 | 24.33 |
| CDX83589 | Canola | nucleus | 18.32 | 23.24 |
| CDY72437 | Canola | nucleus | 7.73 | 22.71 |
| CDY13612 | Canola | nucleus | 18.72 | 22.7 |
| CDY14020 | Canola | plastid | 8.55 | 22.5 |
| CDY40990 | Canola | nucleus | 18.59 | 22.39 |
| CDX99727 | Canola | nucleus | 18.05 | 22.06 |
| CDY40768 | Canola | nucleus | 8.28 | 20.2 |
| CDY44647 | Canola | nucleus, plastid | 6.11 | 18.83 |
| CDY62093 | Canola | nucleus, plastid | 6.24 | 18.4 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078E5G6 | EnsemblPlants:CDX94663 | ProteinID:CDX94663 | ProteinID:CDX94663.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00157998001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EDBD8C | SEG:seg | : | : | : |
Description
BnaC07g09950D
Coordinates
chrLK031883:-:903606..907032
Molecular Weight (calculated)
81555.2 Da
IEP (calculated)
6.556
GRAVY (calculated)
-0.484
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPQEVAGA WGLPSRFGRH NHLPTDASLF STSLPLLPHG KLQSSDIRDG FSFTDDAAGS HPFGNMLPDE EDLLTAMMDD LDLTQLPDSA DDYDLFGSGG
101: GMELDTDSRD GFTMSGGPPR LSIPSLAGPG TVTGEHPYGE HPSRTLFVRN INSNVEDSEL KALFQQYGDI RTLYTTCKHR GFVMISYYDI RAALMAMRSL
201: QNKPLRRRKL DIHFSIPKDN PSEKDMNQGT LVVFNLDPSI TNDDLLVIFG AHGEIKEIRE TPHKWHHKFV EFYDVRAAES ALKALNRCEI AGKRIKVEPS
301: RPGGARRSLM LQLNQELEND DLHYLPLLGS PMANSPPSNW LQMNSPIEGS PLQSVMSRSP VFGFSPTRNI HLSGLASALN SQAPNSKLAP IGRGQTGSSV
401: FQETKMDHKY AGNVSPSGPL ISNGGSIETL SGSEFLWGSP NSRSEPSNSS VWSTSSSGIP FSSAPVHRSV PSPHQTHNVG SAPSGVPLEK RFGFFPESSK
501: ETMFINSLGL NGGSFPSKMT SHGILVEYRM VSSPRFISLL NPGQFTTSGF DGLYENERAR RVESYSSQVE SRKQFQLDLD KIMKGEDSRT TLMIKNIPNK
601: YTSKMLLAAI DEKNQGTYNF LYLPIDFKNK CNVGYAFINI LSPDLIIPFY EAFNGKKWEK FNSEKVASLA YARIQGKSAL ISHFQNSSLM NEDMRCRPII
701: FDTPNSSNSV HQVIGKETKS VDLRDSELDD DDGRGKW
101: GMELDTDSRD GFTMSGGPPR LSIPSLAGPG TVTGEHPYGE HPSRTLFVRN INSNVEDSEL KALFQQYGDI RTLYTTCKHR GFVMISYYDI RAALMAMRSL
201: QNKPLRRRKL DIHFSIPKDN PSEKDMNQGT LVVFNLDPSI TNDDLLVIFG AHGEIKEIRE TPHKWHHKFV EFYDVRAAES ALKALNRCEI AGKRIKVEPS
301: RPGGARRSLM LQLNQELEND DLHYLPLLGS PMANSPPSNW LQMNSPIEGS PLQSVMSRSP VFGFSPTRNI HLSGLASALN SQAPNSKLAP IGRGQTGSSV
401: FQETKMDHKY AGNVSPSGPL ISNGGSIETL SGSEFLWGSP NSRSEPSNSS VWSTSSSGIP FSSAPVHRSV PSPHQTHNVG SAPSGVPLEK RFGFFPESSK
501: ETMFINSLGL NGGSFPSKMT SHGILVEYRM VSSPRFISLL NPGQFTTSGF DGLYENERAR RVESYSSQVE SRKQFQLDLD KIMKGEDSRT TLMIKNIPNK
601: YTSKMLLAAI DEKNQGTYNF LYLPIDFKNK CNVGYAFINI LSPDLIIPFY EAFNGKKWEK FNSEKVASLA YARIQGKSAL ISHFQNSSLM NEDMRCRPII
701: FDTPNSSNSV HQVIGKETKS VDLRDSELDD DDGRGKW
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.