Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79841 | Canola | nucleus | 88.49 | 92.26 |
| CDY42812 | Canola | nucleus | 78.22 | 79.7 |
| CDX83512 | Canola | nucleus | 77.6 | 79.67 |
| AT2G42890.1 | Thale cress | nucleus | 81.19 | 77.82 |
| CDY42813 | Canola | nucleus | 75.5 | 74.66 |
| CDX78826 | Canola | nucleus | 36.14 | 43.91 |
| CDY61671 | Canola | nucleus | 35.64 | 43.37 |
| CDX94663 | Canola | nucleus | 37.13 | 40.71 |
| CDY48336 | Canola | nucleus | 38.24 | 39.97 |
| CDY15631 | Canola | nucleus | 36.39 | 39.95 |
| CDX99820 | Canola | nucleus | 38.61 | 39.39 |
| CDY30687 | Canola | nucleus | 30.69 | 29.01 |
| CDX98985 | Canola | nucleus | 31.19 | 28.47 |
| CDX70025 | Canola | nucleus | 30.94 | 28.15 |
| CDY00238 | Canola | nucleus | 31.81 | 28.12 |
| CDX86947 | Canola | nucleus | 31.44 | 27.94 |
| CDY71762 | Canola | nucleus | 7.92 | 26.67 |
| CDY01848 | Canola | plastid | 15.59 | 25.1 |
| CDY30686 | Canola | nucleus | 15.97 | 24.34 |
| CDY72437 | Canola | nucleus | 7.43 | 23.9 |
| CDY56219 | Canola | plastid | 15.47 | 23.76 |
| CDX83589 | Canola | nucleus | 16.21 | 22.55 |
| CDY13612 | Canola | nucleus | 16.58 | 22.04 |
| CDY40990 | Canola | nucleus | 16.21 | 21.41 |
| CDX99727 | Canola | nucleus | 15.84 | 21.23 |
| CDY14020 | Canola | plastid | 6.19 | 17.86 |
| CDY40768 | Canola | nucleus | 6.19 | 16.56 |
| CDY62093 | Canola | nucleus, plastid | 4.95 | 16.0 |
| CDY44647 | Canola | nucleus, plastid | 4.58 | 15.48 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078J960 | UniProt:A0A078J960 | EnsemblPlants:CDY60197 | ProteinID:CDY60197 |
| ProteinID:CDY60197.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00028286001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 |
| InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 |
| PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| TMHMM:TMhelix | UniParc:UPI0004EF27FA | SEG:seg | : | : | : |
Description
BnaCnng35790DBnaCnng35790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J960]
Coordinates
chrLK033853:+:13147..17387
Molecular Weight (calculated)
89186.0 Da
IEP (calculated)
5.381
GRAVY (calculated)
-0.486
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSIAGTTS TSFSYSTIVI IIVFFFFFAV GGDSKKMEIE PKESLSAADL DMPSLELRST ETFNRGSASD LSMFSSSLPT LLHEKLNMTD SDSWLSLDDK
101: LGVGNSENDS LEEDAEPDSL ETLLPEDENE LLPGLIDELN FNGLPDELEE CDVFCTGGGM ELDVESQENH AVDSGAANSF VPRKRPNTSG RVSVEHPNGE
201: HPSRTLFVRN INSSVEDSEL TALFEPFGEI RSLYTACKSR GFVMISYYDI RASHAAMRAL QNTLLRKRTL DIHFSIPKEN PSEKDMNQGT LVIFNVDTTV
301: SNDELLKLFG AHGEIREIRE TPNRSFHRFI EYYDVRDAES ALKALDRSEI GGKCIKLELS RPGGARRVSV PSTSQDLDRN EIANFFNQVA NSPPAGNWPV
401: GSPVKGSPSH TFPRPHGLGN MPGLASILPG HQPSRYQGLL NHPNQTILNK GLLHNVAFGQ PHSLPEHIGG GISNSMRFIA PPHSSGFGTS SDNRYRWGSP
501: PQHFNYPGYT GASSSSSSKH GFPFAERQGS LLGKYQHHVG SAPSSSHFNT HMNRYTETSS LLPLGFGDMG INKSYTNAHG QANVGVNFTG SGMSLLPTIP
601: FGGSRGLQSV RHEPFAEQGR ITHFETQLTD GGRYHIDLDR IATGDDTRTT LIIKNIPNKY TYMMLVAEID EKHKGDYDFL CLPIEFKNNC NMGYAFVNMV
701: SPLHIVPFQQ TFSGKVWENF NSGKVASLAY AEIQGKSALA SYMQNPSPMK DGKHLFPQVS HYNDDGQDAN DQEQPFSSIW NITALDPDWS YTTDKNVNSK
801: NIVEEESF
101: LGVGNSENDS LEEDAEPDSL ETLLPEDENE LLPGLIDELN FNGLPDELEE CDVFCTGGGM ELDVESQENH AVDSGAANSF VPRKRPNTSG RVSVEHPNGE
201: HPSRTLFVRN INSSVEDSEL TALFEPFGEI RSLYTACKSR GFVMISYYDI RASHAAMRAL QNTLLRKRTL DIHFSIPKEN PSEKDMNQGT LVIFNVDTTV
301: SNDELLKLFG AHGEIREIRE TPNRSFHRFI EYYDVRDAES ALKALDRSEI GGKCIKLELS RPGGARRVSV PSTSQDLDRN EIANFFNQVA NSPPAGNWPV
401: GSPVKGSPSH TFPRPHGLGN MPGLASILPG HQPSRYQGLL NHPNQTILNK GLLHNVAFGQ PHSLPEHIGG GISNSMRFIA PPHSSGFGTS SDNRYRWGSP
501: PQHFNYPGYT GASSSSSSKH GFPFAERQGS LLGKYQHHVG SAPSSSHFNT HMNRYTETSS LLPLGFGDMG INKSYTNAHG QANVGVNFTG SGMSLLPTIP
601: FGGSRGLQSV RHEPFAEQGR ITHFETQLTD GGRYHIDLDR IATGDDTRTT LIIKNIPNKY TYMMLVAEID EKHKGDYDFL CLPIEFKNNC NMGYAFVNMV
701: SPLHIVPFQQ TFSGKVWENF NSGKVASLAY AEIQGKSALA SYMQNPSPMK DGKHLFPQVS HYNDDGQDAN DQEQPFSSIW NITALDPDWS YTTDKNVNSK
801: NIVEEESF
001: MVSSIIAVAE GKKMELEPNK SLSADMPSLL SRSSEAFNGG TGYRSSSDLS MFSSSLPTLF HEKLNMTDSD SWLSFDESSP NLNKLVIGNS EKDSLEDVEP
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
Arabidopsis Description
ML2ML2 [Source:UniProtKB/TrEMBL;Acc:A0A178VQK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.