Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70025 | Canola | nucleus | 94.58 | 94.26 |
| AT5G07290.1 | Thale cress | nucleus | 82.82 | 80.82 |
| CDY30686 | Canola | nucleus | 44.41 | 74.15 |
| CDY30687 | Canola | nucleus | 68.14 | 70.53 |
| CDY00238 | Canola | nucleus | 71.3 | 69.04 |
| CDX86947 | Canola | nucleus | 70.28 | 68.43 |
| CDY71762 | Canola | nucleus | 15.14 | 55.83 |
| CDY72437 | Canola | nucleus | 15.25 | 53.78 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.55 | 52.73 |
| KRH41056 | Soybean | nucleus | 47.57 | 44.13 |
| KRH59735 | Soybean | nucleus | 47.12 | 43.99 |
| KRH63864 | Soybean | nucleus | 47.12 | 42.95 |
| KRH54096 | Soybean | nucleus | 46.55 | 42.61 |
| CDX78826 | Canola | nucleus | 29.27 | 38.95 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 25.88 | 38.62 |
| CDY15631 | Canola | nucleus | 32.09 | 38.59 |
| CDX94663 | Canola | nucleus | 32.09 | 38.53 |
| CDY61671 | Canola | nucleus | 28.7 | 38.25 |
| CDY48336 | Canola | nucleus | 32.43 | 37.13 |
| CDX99820 | Canola | nucleus | 33.11 | 36.99 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 36.95 | 34.94 |
| Zm00001d035763_P003 | Maize | plastid | 37.4 | 34.92 |
| Os05t0102800-01 | Rice | nucleus | 37.51 | 34.76 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 36.27 | 34.19 |
| CDX83512 | Canola | nucleus | 29.6 | 33.29 |
| OQU77194 | Sorghum | plastid | 30.62 | 33.13 |
| CDY42812 | Canola | nucleus | 29.38 | 32.79 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 35.82 | 32.71 |
| CDX79841 | Canola | nucleus | 27.8 | 31.74 |
| CDY42813 | Canola | nucleus | 29.27 | 31.7 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 28.47 | 31.19 |
| CDY01848 | Canola | plastid | 13.9 | 24.5 |
| CDY14020 | Canola | plastid | 7.34 | 23.21 |
| CDY56219 | Canola | plastid | 13.33 | 22.43 |
| CDX83589 | Canola | nucleus | 14.01 | 21.34 |
| CDY13612 | Canola | nucleus | 14.35 | 20.89 |
| CDY40768 | Canola | nucleus | 7.12 | 20.86 |
| CDY40990 | Canola | nucleus | 14.35 | 20.75 |
| CDX99727 | Canola | nucleus | 14.01 | 20.56 |
| CDY44647 | Canola | nucleus, plastid | 5.31 | 19.67 |
| CDY62093 | Canola | nucleus, plastid | 5.42 | 19.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078EA53 | EnsemblPlants:CDX98985 | ProteinID:CDX98985 | ProteinID:CDX98985.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00107104001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EDD5A0 | SEG:seg | : | : | : |
Description
BnaC09g48500D
Coordinates
chrLK031907:-:999940..1005380
Molecular Weight (calculated)
97030.4 Da
IEP (calculated)
7.015
GRAVY (calculated)
-0.574
Length
885 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDLSEPRG GGDTRTIPEK QFGFMKTNPV PEGGGGGGGD ISSNLPQQSS FSVPSAIPNG RTAPSDSHWE SSLFSSSFSE IFSRKLRLPR SDNLSFMPAY
101: PEEEPSQSLE EMEAQTIGNL LPDEDDFFAG VVGHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVGQRA GKRGGSYVFG VGEPPRGEVS SRMLFVTNMD
201: SIIEDYELRA LFKQYGDVRA LHTAGKNRGF ILVSYYDIRA AQNAMRALHG RLLRGRKLDI HYHIPKENSG KVNTSEGALL VNNLDSSVSN EEFYRIVSSY
301: GEIREVRRTM PENSQIYIEF FDVRAAEAAL RALNGLEIAG RQLKLAPSFP EGTSFTPQFA ADDAEEGLHK MAFNNLSSAQ IGRHYPGILA STSINGGSMR
401: MMHNSVGSPV NSFTERHQSR DIPIGMPTST RIISTSKPVG PQESGNPLYS STGIQSMPNL HPHSLHEYLD NFASGSPYKS STTFSEMVSD GQKANEGFMM
501: NNVRGVGVDG FNGGVIGSPA NGGSHRANPN LWSSSNPSNG MMWPNSPSRV NGITSQRIPP VTGFSRASPL MVNMASSPVH HHIGSAPVLN SPFWDRRQTY
601: VAEPPESSGF HFGSHGSMGY PGSSPSHAME MASHKVFSHA GGNRMDANSS NAVPRSSRQV PHFLSGRNPM LAVPGSFDLP NERYRNLSQR RSEFSSSNAE
701: KKLFELDVDR ILRGEDSRTT LMIKNIPNKY TSKMLLAAID EYCKGTYDFL YLPIDFKNKC NVGYAFINLT EPENIVPFYK AFNGKKWEKF NSEKVAYLAY
801: GRIQGKSALI AHFQNSSLMN EDKRCRPILF HTAGPNAGDQ EPFPMGTNIR SRPGKHRTSS IENYNNNFSS SSENREEPPN GTDSF
101: PEEEPSQSLE EMEAQTIGNL LPDEDDFFAG VVGHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVGQRA GKRGGSYVFG VGEPPRGEVS SRMLFVTNMD
201: SIIEDYELRA LFKQYGDVRA LHTAGKNRGF ILVSYYDIRA AQNAMRALHG RLLRGRKLDI HYHIPKENSG KVNTSEGALL VNNLDSSVSN EEFYRIVSSY
301: GEIREVRRTM PENSQIYIEF FDVRAAEAAL RALNGLEIAG RQLKLAPSFP EGTSFTPQFA ADDAEEGLHK MAFNNLSSAQ IGRHYPGILA STSINGGSMR
401: MMHNSVGSPV NSFTERHQSR DIPIGMPTST RIISTSKPVG PQESGNPLYS STGIQSMPNL HPHSLHEYLD NFASGSPYKS STTFSEMVSD GQKANEGFMM
501: NNVRGVGVDG FNGGVIGSPA NGGSHRANPN LWSSSNPSNG MMWPNSPSRV NGITSQRIPP VTGFSRASPL MVNMASSPVH HHIGSAPVLN SPFWDRRQTY
601: VAEPPESSGF HFGSHGSMGY PGSSPSHAME MASHKVFSHA GGNRMDANSS NAVPRSSRQV PHFLSGRNPM LAVPGSFDLP NERYRNLSQR RSEFSSSNAE
701: KKLFELDVDR ILRGEDSRTT LMIKNIPNKY TSKMLLAAID EYCKGTYDFL YLPIDFKNKC NVGYAFINLT EPENIVPFYK AFNGKKWEKF NSEKVAYLAY
801: GRIQGKSALI AHFQNSSLMN EDKRCRPILF HTAGPNAGDQ EPFPMGTNIR SRPGKHRTSS IENYNNNFSS SSENREEPPN GTDSF
001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
Arabidopsis Description
ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.