Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os11t0109933-01 | |
| Os12t0110000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | Os11t0109933-01 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | Os12t0110000-01 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77194 | Sorghum | plastid | 58.95 | 68.83 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 42.72 | 68.8 |
| Zm00001d035763_P003 | Maize | plastid | 68.06 | 68.57 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 67.12 | 68.48 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 67.23 | 68.37 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 66.7 | 65.74 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.49 | 56.36 |
| Os02t0517531-01 | Rice | nucleus, plasma membrane | 46.28 | 44.16 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 44.4 | 42.48 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 43.87 | 42.32 |
| CDY30686 | Canola | nucleus | 22.2 | 40.0 |
| PGSC0003DMT400005752 | Potato | nucleus | 40.31 | 39.45 |
| Solyc05g023740.2.1 | Tomato | nucleus | 39.79 | 39.09 |
| CDY30687 | Canola | nucleus | 34.76 | 38.83 |
| KRH59735 | Soybean | nucleus | 38.22 | 38.5 |
| Bra010044.1-P | Field mustard | nucleus | 36.86 | 38.43 |
| Bra029297.1-P | Field mustard | nucleus | 35.81 | 38.34 |
| KRH41056 | Soybean | nucleus | 37.91 | 37.95 |
| CDX86947 | Canola | nucleus | 35.81 | 37.62 |
| CDX98985 | Canola | nucleus | 34.76 | 37.51 |
| AT5G61960.1 | Thale cress | nucleus | 35.92 | 37.49 |
| CDY00238 | Canola | nucleus | 35.81 | 37.42 |
| AT5G07290.1 | Thale cress | nucleus | 35.5 | 37.38 |
| Bra009274.1-P | Field mustard | nucleus | 34.45 | 37.18 |
| KRH63864 | Soybean | nucleus | 37.7 | 37.08 |
| CDX70025 | Canola | nucleus | 34.45 | 37.05 |
| KRH45198 | Soybean | nucleus | 28.59 | 36.99 |
| KRH54096 | Soybean | nucleus | 36.86 | 36.4 |
| Os02t0719800-02 | Rice | plasma membrane | 30.89 | 34.79 |
| Os02t0319100-01 | Rice | nucleus | 27.75 | 32.68 |
| CDY72437 | Canola | nucleus | 7.75 | 29.48 |
| Os01t0907900-01 | Rice | nucleus | 14.66 | 20.5 |
| Os09t0531200-01 | Rice | cytosol | 6.6 | 19.5 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 5.55 | 13.62 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4337535 | ProteinID:AAS88822.2 | ProteinID:AAW56930.1 | EMBL:AB244278 |
| EMBL:AK120322 | EMBL:AK121634 | ProteinID:BAF16302.1 | ProteinID:BAS91840.1 | ProteinID:EEE62003.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 |
| InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os05g0102800 | EnsemblPlants:Os05t0102800-01 | PFAM:PF00076 |
| PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF7 | UniProt:Q75M35 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00004BA936 | RefSeq:XP_015640244.1 | RefSeq:XP_015640245.1 |
| RefSeq:XP_015640246.1 | SEG:seg | : | : | : | : |
Description
ML3Similar to AML1. (Os05t0102800-01);Similar to AML1. (Os05t0102800-02);Similar to AML1. (Os05t0102800-03);Similar to AML6. (Os05t0102800-04)
Coordinates
chr5:-:160762..167722
Molecular Weight (calculated)
104528.0 Da
IEP (calculated)
6.464
GRAVY (calculated)
-0.573
Length
955 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIASGAIDR RHLSPFTPTS DDSSSSFFSQ DLVPTERQVG FWNSESMVDH KGSKSVFASP LEKIQPNGAN HAGDPETPGG QAFKGLDILS LSNLMRQENA
101: SGSPSLSWGE ILTNPISRLG LSTRETAFVE PTTADQHVPG YGKGLSSSSL SEVFSGKSRE IVSGVLCQST GTHTSIYDSD EPLESMEAIE AQTIGDLLPD
201: DDDDLISGIA DGFEFTGMST NQDDADEDIF CTGGGMELEN NDSVKGDKVQ DGSFKSQISS GHSINKQPSR TLVVRNITAN IEDSDLTVLF QQYGDIRMLY
301: TSFKHHGFVT VSYYDIRAAQ NAMRALHSKP LGLMKLDVQF SFPKENVPGK DIDKGMLVVS NIDSSISNDD LLQMLSVYGD VKEISSSPIS CTKKFVEFYD
401: VRAAEEALHD LNKGGISGPK FKVELSQHGE AGSCLRQQHS REWKQDSLPH QPKNSSPGTI GKLGTKCQDN STVHNLFSPV NQQLESPTQC ISTTGPQILS
501: SPIRIKSTLQ HNNQASVGDL SGPLGQGNFG RGIQTLHPRS LPEHHNRICN NSKSMTVSGR NASSRQDGVD HNIQKVGPAG FCGHSFDQNN EAFGFTEIGS
601: CPLHGYHYTW NHTNVFPQSP SAPILWSNLQ HPMHVHSYPG VPPHMLNTGS YPMDQHHLGS APDNGGSFGN VHSFHPGSLG SIGLHGSPQL YPSELSAFAS
701: SRGNFREALF SPVGGGFQSL QQMCNAINGR NPMIHVSTSY DATNDRMRSR RHDGNPAQSE NKRQFELDID RIAKGEDSRT TLMIKNIPNK YNCKLLLAVI
801: DENHRGTYDF IYLPIDFKNK CNVGYAFINM TDPQHIIPFY KTFNGKKWEK FNSEKVASLA YARIQGRSAL IAHFQNSSLM NEDKWCRPML FHKDGPNAGD
901: QEPFPVGNNV RSRAGRNRSL ISLDTKDASP SSSPDQESNS VGTANSTCRT TLEQT
101: SGSPSLSWGE ILTNPISRLG LSTRETAFVE PTTADQHVPG YGKGLSSSSL SEVFSGKSRE IVSGVLCQST GTHTSIYDSD EPLESMEAIE AQTIGDLLPD
201: DDDDLISGIA DGFEFTGMST NQDDADEDIF CTGGGMELEN NDSVKGDKVQ DGSFKSQISS GHSINKQPSR TLVVRNITAN IEDSDLTVLF QQYGDIRMLY
301: TSFKHHGFVT VSYYDIRAAQ NAMRALHSKP LGLMKLDVQF SFPKENVPGK DIDKGMLVVS NIDSSISNDD LLQMLSVYGD VKEISSSPIS CTKKFVEFYD
401: VRAAEEALHD LNKGGISGPK FKVELSQHGE AGSCLRQQHS REWKQDSLPH QPKNSSPGTI GKLGTKCQDN STVHNLFSPV NQQLESPTQC ISTTGPQILS
501: SPIRIKSTLQ HNNQASVGDL SGPLGQGNFG RGIQTLHPRS LPEHHNRICN NSKSMTVSGR NASSRQDGVD HNIQKVGPAG FCGHSFDQNN EAFGFTEIGS
601: CPLHGYHYTW NHTNVFPQSP SAPILWSNLQ HPMHVHSYPG VPPHMLNTGS YPMDQHHLGS APDNGGSFGN VHSFHPGSLG SIGLHGSPQL YPSELSAFAS
701: SRGNFREALF SPVGGGFQSL QQMCNAINGR NPMIHVSTSY DATNDRMRSR RHDGNPAQSE NKRQFELDID RIAKGEDSRT TLMIKNIPNK YNCKLLLAVI
801: DENHRGTYDF IYLPIDFKNK CNVGYAFINM TDPQHIIPFY KTFNGKKWEK FNSEKVASLA YARIQGRSAL IAHFQNSSLM NEDKWCRPML FHKDGPNAGD
901: QEPFPVGNNV RSRAGRNRSL ISLDTKDASP SSSPDQESNS VGTANSTCRT TLEQT
001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
Arabidopsis Description
ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.