Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | CDY00652 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY27967 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY64943 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | CDY67456 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010044.1-P | Field mustard | nucleus | 98.69 | 98.47 |
| CDX86947 | Canola | nucleus | 96.72 | 97.25 |
| CDY30687 | Canola | nucleus | 82.28 | 87.95 |
| CDY30686 | Canola | nucleus | 50.44 | 86.98 |
| CDY71762 | Canola | nucleus | 22.65 | 86.25 |
| AT5G61960.1 | Thale cress | nucleus | 85.34 | 85.25 |
| CDY72437 | Canola | nucleus | 22.32 | 81.27 |
| CDX98985 | Canola | nucleus | 69.04 | 71.3 |
| CDX70025 | Canola | nucleus | 69.04 | 71.06 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.24 | 51.82 |
| KRH59735 | Soybean | nucleus | 45.62 | 43.99 |
| KRH41056 | Soybean | nucleus | 45.73 | 43.82 |
| KRH63864 | Soybean | nucleus | 45.51 | 42.84 |
| KRH54096 | Soybean | nucleus | 44.53 | 42.09 |
| CDX94663 | Canola | nucleus | 30.63 | 37.99 |
| CDY48336 | Canola | nucleus | 31.95 | 37.77 |
| CDY15631 | Canola | nucleus | 30.31 | 37.64 |
| CDX78826 | Canola | nucleus | 27.35 | 37.59 |
| CDX99820 | Canola | nucleus | 32.28 | 37.25 |
| CDY61671 | Canola | nucleus | 26.7 | 36.75 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 23.63 | 36.42 |
| Os05t0102800-01 | Rice | nucleus | 37.42 | 35.81 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 35.67 | 34.83 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 35.56 | 34.61 |
| Zm00001d035763_P003 | Maize | plastid | 35.45 | 34.18 |
| CDX83512 | Canola | nucleus | 28.77 | 33.42 |
| CDY42812 | Canola | nucleus | 28.88 | 33.29 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 34.9 | 32.92 |
| OQU77194 | Sorghum | plastid | 28.77 | 32.15 |
| CDX79841 | Canola | nucleus | 27.24 | 32.13 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 28.12 | 31.81 |
| CDY42813 | Canola | nucleus | 28.23 | 31.58 |
| CDY01848 | Canola | plastid | 12.04 | 21.91 |
| CDY14020 | Canola | plastid | 6.35 | 20.71 |
| CDY56219 | Canola | plastid | 11.71 | 20.34 |
| CDX83589 | Canola | nucleus | 12.58 | 19.79 |
| CDY40768 | Canola | nucleus | 6.46 | 19.54 |
| CDY13612 | Canola | nucleus | 12.91 | 19.41 |
| CDY40990 | Canola | nucleus | 12.8 | 19.12 |
| CDX99727 | Canola | nucleus | 12.36 | 18.74 |
| CDY62093 | Canola | nucleus, plastid | 4.6 | 16.8 |
| CDY44647 | Canola | nucleus, plastid | 4.27 | 16.32 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078ELI8 | EnsemblPlants:CDY00238 | ProteinID:CDY00238 | ProteinID:CDY00238.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00109787001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EE36AC | SEG:seg | : | : | : |
Description
BnaA06g21390D
Coordinates
chrLK031917:-:329596..335504
Molecular Weight (calculated)
101010.0 Da
IEP (calculated)
7.169
GRAVY (calculated)
-0.588
Length
914 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPSDIMEQR GVSTPSHFRE DTRISSERQF GFLKTDLIPE NQGGRDRFSN LPKSSWTPES HQLKPQSSLS GVHPSVSPNA RNATNGSQWE SSLFSSSLSD
101: TFSRKLRLQR SDMLSPMSAN TVATHREEEP SESLEEIEAQ TIGNLLPDED DLFAEVMGDV GRKSRANGDD LDDFDLFSSV GGMELDGDVF PPMGPRNGER
201: GRNNSVGEHH RAEIPSRTIL AGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY YDIRAAQNAA RALHNKLLRG TKLDIRYSIP KEIPSGKDAS
301: KGALLITNID SSISNEELNR MVKSYGEIKE IRRTMHDNPQ IYIEFFDIRA SEAALGGLNG LEVAGKQLKL ALTYPESQRY MSQFVAHDAE GFLPKMPFTN
401: TSSGHMGRHF PGIIPSTSID GGPMGISHSS VGSPVNSFIE RHRSLSIPIG FPPSANVISA SKPGIQEHVH PFDNSNMGIQ SMPNLHPHSF SEYLDNFTNG
501: SPYKSSTAFS EVVSDGSKAN DAFMLHNVRG VDGFNGGGIG SPMNQNSRRP NLNLWSNSNT QQQNPSGGMM WPSSPSHLNG ITSQRPPVTV FSRAPPVMVN
601: MASSPVHHHI GSAPVLNSPF WDRRQAYVAE SLESPGFHIG SHGSMGFPGS SPSHPMEIGS HKSFSHVAGN RMDINSQNAV LRSPQQLSHL FPGRNPMVSM
701: PGSFDSPNER YRNLSHRRSE SSSSHADKKL FELDVDRILR GDDVRTTLML KNIPNKYTSK MLLSAIDEHC KQASVLPFYI INKCNVGYAF INLIEPEKIV
801: PFYKAFNGKK WEKFNSEKVA TLTYARIQGK VALIAHFQNS SLMNEDKRCR PILFHTDGPN AGDQEPFPMG TNIRSRPGKP RSSSIDNHNS FSIASVSENR
901: EEPPNGTDPF LKEN
101: TFSRKLRLQR SDMLSPMSAN TVATHREEEP SESLEEIEAQ TIGNLLPDED DLFAEVMGDV GRKSRANGDD LDDFDLFSSV GGMELDGDVF PPMGPRNGER
201: GRNNSVGEHH RAEIPSRTIL AGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY YDIRAAQNAA RALHNKLLRG TKLDIRYSIP KEIPSGKDAS
301: KGALLITNID SSISNEELNR MVKSYGEIKE IRRTMHDNPQ IYIEFFDIRA SEAALGGLNG LEVAGKQLKL ALTYPESQRY MSQFVAHDAE GFLPKMPFTN
401: TSSGHMGRHF PGIIPSTSID GGPMGISHSS VGSPVNSFIE RHRSLSIPIG FPPSANVISA SKPGIQEHVH PFDNSNMGIQ SMPNLHPHSF SEYLDNFTNG
501: SPYKSSTAFS EVVSDGSKAN DAFMLHNVRG VDGFNGGGIG SPMNQNSRRP NLNLWSNSNT QQQNPSGGMM WPSSPSHLNG ITSQRPPVTV FSRAPPVMVN
601: MASSPVHHHI GSAPVLNSPF WDRRQAYVAE SLESPGFHIG SHGSMGFPGS SPSHPMEIGS HKSFSHVAGN RMDINSQNAV LRSPQQLSHL FPGRNPMVSM
701: PGSFDSPNER YRNLSHRRSE SSSSHADKKL FELDVDRILR GDDVRTTLML KNIPNKYTSK MLLSAIDEHC KQASVLPFYI INKCNVGYAF INLIEPEKIV
801: PFYKAFNGKK WEKFNSEKVA TLTYARIQGK VALIAHFQNS SLMNEDKRCR PILFHTDGPN AGDQEPFPMG TNIRSRPGKP RSSSIDNHNS FSIASVSENR
901: EEPPNGTDPF LKEN
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.