Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G008000.1 | Wheat | nucleus | 92.58 | 58.65 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 92.75 | 58.57 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 93.09 | 56.97 |
| OQU77194 | Sorghum | plastid | 62.73 | 45.48 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 8.26 | 44.55 |
| Os05t0102800-01 | Rice | nucleus | 68.8 | 42.72 |
| Zm00001d035763_P003 | Maize | plastid | 64.76 | 40.51 |
| CDY30686 | Canola | nucleus | 32.55 | 36.42 |
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 8.77 | 30.41 |
| HORVU2Hr1G071240.13 | Barley | nucleus | 45.87 | 28.94 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 45.53 | 27.27 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 45.53 | 27.05 |
| KRH59735 | Soybean | nucleus | 42.16 | 26.37 |
| KRH45198 | Soybean | nucleus | 32.72 | 26.29 |
| Solyc05g023740.2.1 | Tomato | nucleus | 42.83 | 26.13 |
| PGSC0003DMT400005752 | Potato | nucleus | 43.0 | 26.13 |
| KRH41056 | Soybean | nucleus | 41.99 | 26.1 |
| Bra009274.1-P | Field mustard | nucleus | 38.79 | 25.99 |
| CDX70025 | Canola | nucleus | 38.79 | 25.9 |
| CDX98985 | Canola | nucleus | 38.62 | 25.88 |
| CDY30687 | Canola | nucleus | 37.27 | 25.85 |
| Bra029297.1-P | Field mustard | nucleus | 37.27 | 24.78 |
| Bra010044.1-P | Field mustard | nucleus | 38.11 | 24.67 |
| AT5G61960.1 | Thale cress | nucleus | 37.77 | 24.48 |
| AT5G07290.1 | Thale cress | nucleus | 37.44 | 24.48 |
| KRH63864 | Soybean | nucleus | 39.46 | 24.1 |
| CDX86947 | Canola | nucleus | 36.42 | 23.76 |
| CDY00238 | Canola | nucleus | 36.42 | 23.63 |
| KRH54096 | Soybean | nucleus | 38.28 | 23.47 |
| HORVU7Hr1G000370.12 | Barley | nucleus, plastid | 34.57 | 23.09 |
| HORVU3Hr1G091930.1 | Barley | nucleus | 17.88 | 15.66 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 8.94 | 15.41 |
| CDY72437 | Canola | nucleus | 0.51 | 1.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A287EEU3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:HORVU1Hr1G000530 | EnsemblPlants:HORVU1Hr1G000530.2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 |
| InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 |
| PANTHER:PTHR44127:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000B4869EC |
Description
No Description!
Coordinates
chrchr1H:-:1430871..1434848
Molecular Weight (calculated)
65036.3 Da
IEP (calculated)
9.181
GRAVY (calculated)
-0.658
Length
593 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEGILAVSN IDPSVSNDDL LQALTVYGDV KEISRASTSC NKKLVEFYDV RAAEAALYDL NKGAISGPKI KAEVSNPGGA NFGLRQQYPR EWKLDGSPHQ
101: PRNSPPGIIG GPRSHENSSL HNLFSPVSPQ LDRSPHGIAS SGPQKLSSPI RIEPARQYNN QAAISELGGS LGQGNFGHGM QMFQPHSLPE CQNGMCNISK
201: SMTSSGRSAG FRVDGVDYSH LQKVGSGSLH GHSFDQNNEA FGPTGVGSFP LNGHHYSWNS SNAFPQSPSS PMLWSNMQHP GHMHGYPGVV PPHTLNNGAY
301: PMDQHHMGSA PNNGGGFRNA RSVHPGSLGS VGFPGSPQMY PSDVPVFTPA RGSYRDTMFS PVGAGFPSLQ QMCNVMNRRN PMVQVSASYD ATNDRMRRSR
401: HDGNAAVQPE NKRLFELDIE RIAQHEDPRT TLMIKNIPNK YNCKLLLGVI DENHRGTYDF VYLPIDFKNK CNVGYAFINM TDPQHIIPFY KTFNGKRWEK
501: FNSEKVATLA YARIQGRKQL VAHFQNSSLM NEDKGCRPIL FGEDGVQEPF PVGNNIRPRS GRNRPLHSSD TRGDASLSTS PNLENSSRRA NAV
101: PRNSPPGIIG GPRSHENSSL HNLFSPVSPQ LDRSPHGIAS SGPQKLSSPI RIEPARQYNN QAAISELGGS LGQGNFGHGM QMFQPHSLPE CQNGMCNISK
201: SMTSSGRSAG FRVDGVDYSH LQKVGSGSLH GHSFDQNNEA FGPTGVGSFP LNGHHYSWNS SNAFPQSPSS PMLWSNMQHP GHMHGYPGVV PPHTLNNGAY
301: PMDQHHMGSA PNNGGGFRNA RSVHPGSLGS VGFPGSPQMY PSDVPVFTPA RGSYRDTMFS PVGAGFPSLQ QMCNVMNRRN PMVQVSASYD ATNDRMRRSR
401: HDGNAAVQPE NKRLFELDIE RIAQHEDPRT TLMIKNIPNK YNCKLLLGVI DENHRGTYDF VYLPIDFKNK CNVGYAFINM TDPQHIIPFY KTFNGKRWEK
501: FNSEKVATLA YARIQGRKQL VAHFQNSSLM NEDKGCRPIL FGEDGVQEPF PVGNNIRPRS GRNRPLHSSD TRGDASLSTS PNLENSSRRA NAV
001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
Arabidopsis Description
ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.