Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G149200.2 | |
| TraesCS5B01G147900.4 | |
| TraesCS5D01G143600.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | TraesCS5A01G149200.2 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | TraesCS5B01G147900.4 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | TraesCS5D01G143600.3 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G008000.1 | Wheat | nucleus | 93.5 | 96.79 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 93.7 | 96.7 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 56.97 | 93.09 |
| Os05t0102800-01 | Rice | nucleus | 65.74 | 66.7 |
| OQU77194 | Sorghum | plastid | 53.66 | 63.57 |
| Zm00001d035763_P003 | Maize | plastid | 61.3 | 62.66 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 5.99 | 52.73 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 41.28 | 40.4 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 41.07 | 39.88 |
| TraesCS2A01G287900.4 | Wheat | nucleus | 37.15 | 39.0 |
| PGSC0003DMT400005752 | Potato | nucleus | 37.98 | 37.7 |
| Solyc05g023740.2.1 | Tomato | nucleus | 37.56 | 37.45 |
| CDY30686 | Canola | nucleus | 20.23 | 36.98 |
| KRH59735 | Soybean | nucleus | 36.12 | 36.92 |
| KRH41056 | Soybean | nucleus | 36.12 | 36.69 |
| Bra010044.1-P | Field mustard | nucleus | 33.95 | 35.92 |
| CDX98985 | Canola | nucleus | 32.71 | 35.82 |
| Bra009274.1-P | Field mustard | nucleus | 32.71 | 35.82 |
| CDX70025 | Canola | nucleus | 32.71 | 35.7 |
| Bra029297.1-P | Field mustard | nucleus | 32.82 | 35.65 |
| AT5G61960.1 | Thale cress | nucleus | 33.54 | 35.52 |
| CDY30687 | Canola | nucleus | 31.27 | 35.44 |
| KRH45198 | Soybean | nucleus | 26.83 | 35.23 |
| CDX86947 | Canola | nucleus | 32.92 | 35.09 |
| AT5G07290.1 | Thale cress | nucleus | 32.71 | 34.95 |
| KRH63864 | Soybean | nucleus | 34.98 | 34.91 |
| CDY00238 | Canola | nucleus | 32.92 | 34.9 |
| KRH54096 | Soybean | nucleus | 34.47 | 34.54 |
| TraesCS7A01G003100.1 | Wheat | plastid | 30.55 | 34.1 |
| TraesCS4A01G495500.1 | Wheat | plastid | 30.34 | 33.56 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 4.95 | 27.27 |
| CDY72437 | Canola | nucleus | 7.02 | 27.09 |
| TraesCS3A01G413400.1 | Wheat | nucleus | 13.52 | 19.26 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 3.3 | 12.8 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF04059 | PFAM:PF13893 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1A01G005800 | EnsemblPlants:TraesCS1A01G005800.2 | TIGR:cd12524 |
| TIGR:cd12531 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:3386287..3391808
Molecular Weight (calculated)
105359.0 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.512
Length
969 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIASGVIDR GHLSSFGGPP PDSSSSFFSE DLVPTERQVG FWKSESMVDQ RGSKPAFASP LEKIHPMGAN PEGGLEQTGG QVFKGLDALR VSKAMGQGNA
101: SSSPSVSWGD MLTTPGSRFG LSAREAGIAE TASGNSRIMA AGVCGQSADT LSFICEGDEA LGSMKEVEAQ TIGDLLPTDD DLISGVIDGF ELSGLSINQD
201: DADEDIFGTG GGLELENDDS ISIKGARNLE GSSKCHFPGE HHINKCPSRT LFVTNINTNI LDSDLRVLFQ QYGDVHKLYT CKEHGYVTVS YYDIRAAQNA
301: MRALHGKPLG LVKLDVQFCI PKGTASDKDI SKGILVVSNI DPSVSNDDLL QALTVYGDVK EICRASTSCN KKLVEFYDVR AAEAALYDLS KGAISGPKIK
401: AEVSNPGGTI FGLRQQYPRE WKLDGSPRQP RNSPPGIIGG PKSHENSTLH NIFSPVSPQL DRSPHGIASS GPQKLSSPIR IEPTRQYNNQ AAISELGGSL
501: GQGNFGHGMQ MFHPHSLPES QNGICNISKS MTSSGRSAGF RVDGVDYSHL QKVGSGSLHG HSFDQNNEAF GPAGVGSFPL NGHHYSWNNS NAFPQSPSSP
601: MLWSNVQHPG HMHGYPGVVP PHTLNNGAYP MDQHHMGSAP NNGGSFRNAR SVHPGSLGSV GFPGSPQMYP SDVPVFAPAR GSYRETMFSP VGTGFPSLQQ
701: MCNAMNRRNP MVQVSASYDA TNDRMRNRRH DGNAVQPENK RLFELDIERI AKGEDPRTTL MIKNIPNKYN CKLLLGVIDE NHRGTYDFVY LPIDFKNKCN
801: VGYAFINMTD PQHIIPFYKT FNGKRWEKFN SEKVATLAYA RIQGRNELVS HFRNSSLMNE DKWCRPILFH KDGPNEPFPV GNNIRPRSGR NRPLHSADTR
901: GDASLSTSPN QENSSRRANA AEGDDSIFAH SLEDEEAAIN YPQFCYLFFS PARLGYVASS NGLLAIRRK
101: SSSPSVSWGD MLTTPGSRFG LSAREAGIAE TASGNSRIMA AGVCGQSADT LSFICEGDEA LGSMKEVEAQ TIGDLLPTDD DLISGVIDGF ELSGLSINQD
201: DADEDIFGTG GGLELENDDS ISIKGARNLE GSSKCHFPGE HHINKCPSRT LFVTNINTNI LDSDLRVLFQ QYGDVHKLYT CKEHGYVTVS YYDIRAAQNA
301: MRALHGKPLG LVKLDVQFCI PKGTASDKDI SKGILVVSNI DPSVSNDDLL QALTVYGDVK EICRASTSCN KKLVEFYDVR AAEAALYDLS KGAISGPKIK
401: AEVSNPGGTI FGLRQQYPRE WKLDGSPRQP RNSPPGIIGG PKSHENSTLH NIFSPVSPQL DRSPHGIASS GPQKLSSPIR IEPTRQYNNQ AAISELGGSL
501: GQGNFGHGMQ MFHPHSLPES QNGICNISKS MTSSGRSAGF RVDGVDYSHL QKVGSGSLHG HSFDQNNEAF GPAGVGSFPL NGHHYSWNNS NAFPQSPSSP
601: MLWSNVQHPG HMHGYPGVVP PHTLNNGAYP MDQHHMGSAP NNGGSFRNAR SVHPGSLGSV GFPGSPQMYP SDVPVFAPAR GSYRETMFSP VGTGFPSLQQ
701: MCNAMNRRNP MVQVSASYDA TNDRMRNRRH DGNAVQPENK RLFELDIERI AKGEDPRTTL MIKNIPNKYN CKLLLGVIDE NHRGTYDFVY LPIDFKNKCN
801: VGYAFINMTD PQHIIPFYKT FNGKRWEKFN SEKVATLAYA RIQGRNELVS HFRNSSLMNE DKWCRPILFH KDGPNEPFPV GNNIRPRSGR NRPLHSADTR
901: GDASLSTSPN QENSSRRANA AEGDDSIFAH SLEDEEAAIN YPQFCYLFFS PARLGYVASS NGLLAIRRK
001: MRGVSTPSHF HEDIHITSER QFGFMKTDMM PENQGGRDRL SSMPKSSWTS ESYQLKPQSS FSGSHPSGSP NARNTTNGSQ WESSLFSSSM SDLFSRKLRL
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.