Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 86.8 | 65.17 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 81.2 | 59.01 |
| TraesCS5B01G319500.1 | Wheat | plastid | 87.2 | 55.47 |
| Os09t0531200-01 | Rice | cytosol | 34.8 | 26.93 |
| Zm00001d006207_P001 | Maize | plastid | 30.8 | 23.05 |
| OQU89813 | Sorghum | nucleus, plastid | 30.0 | 20.38 |
| PGSC0003DMT400091031 | Potato | cytosol | 19.6 | 19.76 |
| Solyc01g110210.1.1 | Tomato | nucleus | 18.0 | 17.51 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 13.6 | 17.0 |
| PGSC0003DMT400086312 | Potato | cytosol, nucleus, plasma membrane, plastid | 16.8 | 16.94 |
| Solyc01g110230.1.1 | Tomato | cytosol | 16.8 | 16.54 |
| PGSC0003DMT400085334 | Potato | peroxisome | 17.6 | 16.42 |
| Solyc01g110220.1.1 | Tomato | cytosol | 16.0 | 16.39 |
| AT1G37140.1 | Thale cress | plastid | 15.2 | 16.31 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 10.8 | 15.34 |
| KRH18810 | Soybean | cytosol | 16.4 | 15.24 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 18.0 | 15.2 |
| Solyc01g110200.1.1 | Tomato | plastid | 16.8 | 15.16 |
| CDY44647 | Canola | nucleus, plastid | 14.4 | 15.06 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 14.4 | 15.06 |
| PGSC0003DMT400090567 | Potato | plastid | 18.0 | 15.05 |
| CDY62093 | Canola | nucleus, plastid | 14.8 | 14.8 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 15.6 | 14.34 |
| AT5G07930.3 | Thale cress | nucleus | 16.8 | 14.29 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 8.0 | 14.29 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 16.0 | 14.29 |
| CDY14020 | Canola | plastid | 16.0 | 14.29 |
| Solyc05g056360.1.1 | Tomato | cytosol | 18.0 | 13.64 |
| KRH29371 | Soybean | nucleus | 19.6 | 13.32 |
| VIT_18s0001g03840.t01 | Wine grape | mitochondrion | 16.0 | 13.2 |
| PGSC0003DMT400008115 | Potato | cytosol | 7.6 | 13.19 |
| CDY40768 | Canola | nucleus | 15.6 | 12.91 |
| Solyc01g110260.1.1 | Tomato | cytosol | 9.6 | 12.9 |
| KRH24390 | Soybean | nucleus | 18.0 | 12.75 |
| PGSC0003DMT400060283 | Potato | cytosol | 12.4 | 10.3 |
| TraesCS3A01G413400.1 | Wheat | nucleus | 20.4 | 7.5 |
| TraesCS7A01G003100.1 | Wheat | plastid | 14.0 | 4.03 |
| TraesCS4A01G495500.1 | Wheat | plastid | 14.0 | 4.0 |
| TraesCS2A01G287900.4 | Wheat | nucleus | 12.4 | 3.36 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 12.8 | 3.3 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G319000.1 | EnsemblPlantsGene:TraesCS5A01G319000 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5A:-:529436861..529439133
Molecular Weight (calculated)
27125.5 Da
IEP (calculated)
6.483
GRAVY (calculated)
-0.120
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MELAMAAAYT SCLGLPPAAH PYDDASVACA LGQLYSTKDP FALPVSCLLP PPELPPAFGL PVGGLAPVCC CAKAAGPPAF PPFPWAHAPS PPAPPRCAIT
101: EIDESREVES EDNLSPRSVL TPWRRPTPAS PLSPPPPLVV GGKRAFDPSS EKTSLMICNI PNGFVKRRFM AILDQHCVQE NDNPEWRVVG GGKFVRSEYD
201: FLYIPIDFRK RRQIETCCSG EQNCLSWWLL ASDVFASSRG WRPTHLTVGA
101: EIDESREVES EDNLSPRSVL TPWRRPTPAS PLSPPPPLVV GGKRAFDPSS EKTSLMICNI PNGFVKRRFM AILDQHCVQE NDNPEWRVVG GGKFVRSEYD
201: FLYIPIDFRK RRQIETCCSG EQNCLSWWLL ASDVFASSRG WRPTHLTVGA
001: MASSDDPAPE NNHVSVLARQ ARNPPTHFFF PHNPSPRTYY FSAPPQIYFI SDIYLPPPPS IWVYYPLWYI NPNPNVYEST QELPQRYSPN PSQEMTLPPT
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV
Arabidopsis Description
MCT2MEI2 C-terminal RRM only like 2 [Source:UniProtKB/TrEMBL;Acc:F4K9I2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.