Factsheet for Bra035509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44647	Canola	nucleus, plastid	98.74	98.74
AT1G37140.1	Thale cress	plastid	57.74	59.23
GSMUA_Achr11P...	Banana	cytosol	25.52	38.12
HORVU6Hr1G025080.3	Barley	mitochondrion	26.78	37.43
TraesCS6A01G131000.1	Wheat	mitochondrion	26.36	35.8
KRH16604	Soybean	cytosol, nucleus, peroxisome	33.05	29.04
KRH18810	Soybean	cytosol	32.22	28.62
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	32.64	26.35
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	24.69	23.51
Solyc05g056360.1.1	Tomato	cytosol	31.8	23.03
Bra028677.1-P	Field mustard	nucleus, plastid	25.94	22.14
Zm00001d006207_P001	Maize	plastid	30.13	21.56
PGSC0003DMT400060283	Potato	cytosol	26.36	20.93
TraesCS7B01G269200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	26.78	20.32
Os09t0531200-01	Rice	cytosol	26.78	19.81
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	26.36	19.75
VIT_18s0001g03840.t01	Wine grape	mitochondrion	24.69	19.47
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.78	19.22
HORVU5Hr1G081420.2	Barley	mitochondrion	27.2	18.9
Zm00001d053860_P001	Maize	plastid	27.2	18.62
OQU89813	Sorghum	nucleus, plastid	28.45	18.48
EES04542	Sorghum	plastid	26.78	18.44
Os02t0157900-00	Rice	mitochondrion, plastid	28.87	17.74
TraesCS6B01G159300.2	Wheat	plastid	29.29	17.07
TraesCS5B01G319500.1	Wheat	plastid	27.2	16.54
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	15.06	14.4
Bra004255.1-P	Field mustard	plastid	31.8	13.82
Bra036347.1-P	Field mustard	plastid	29.71	13.05
Bra025185.1-P	Field mustard	nucleus	32.64	12.83
Bra013285.1-P	Field mustard	nucleus	19.67	7.08
Bra030135.1-P	Field mustard	nucleus	18.83	6.11
Bra032316.1-P	Field mustard	nucleus	19.25	5.81
Bra029297.1-P	Field mustard	nucleus	20.08	5.38
Bra009274.1-P	Field mustard	nucleus	19.67	5.31
Bra004728.1-P	Field mustard	nucleus	15.9	5.16
Bra010044.1-P	Field mustard	nucleus	19.67	5.13
Bra000279.1-P	Field mustard	nucleus	16.74	5.08

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra035509	EnsemblPlants:Bra035509.1	EnsemblPlants:Bra035509.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0010187	InterPro:IPR012677	UniProt:M4F359
InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF04059	PANTHER:PTHR45087	InterPro:RBD_domain_sf
SUPFAM:SSF54928	UniParc:UPI00025461AB	SEG:seg	:	:	:

Description

AT1G37140 (E=2e-056) MCT1 | MCT1 (mei2 C-Terminal RRM only like 1); RNA binding

Coordinates

chrA08:-:7965473..7966809

Molecular Weight (calculated)

27597.4 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.610

Length

239 amino acids

Sequence
(BLAST)

001: MAPPLNPKAP EFYPKNRAQE LSQKPKFLSF TTFSVKPGKL SRPKCLPPRL LKQKAWVQKN RNVLPRKPLP PPKEAELKSL FGDQTSVMIR NIPNMFGRKD
101: LLRILNNHCR RENKVQQQIP SSYDFLYLPM DFVKHANLGY AFVNFTSSVA AERFRREYDN FLWVGFGYKK ICEISEAKYQ GKEEYTQHFK DSRFPCHTDD
201: YLPVILSPPS DGFTCYSLAT LGYRVSTRGG GTGRRIHVA

Best Arabidopsis Sequence Match ( AT1G37140.1 )
(BLAST)

001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR

Arabidopsis Description

MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.