Factsheet for Zm00001d006207_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89813	Sorghum	nucleus, plastid	63.47	57.61
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	31.44	41.83
TraesCS7B01G269200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	36.23	38.41
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	36.53	38.24
VIT_03s0038g00390.t01	Wine grape	cytosol	15.87	37.86
PGSC0003DMT400008115	Potato	cytosol	16.17	37.5
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	36.53	36.64
HORVU5Hr1G081420.2	Barley	mitochondrion	35.93	34.88
Os09t0531200-01	Rice	cytosol	33.53	34.67
Solyc01g110260.1.1	Tomato	cytosol	17.37	31.18
TraesCS5B01G319500.1	Wheat	plastid	36.53	31.04
AT1G37140.1	Thale cress	plastid	21.56	30.9
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	23.05	30.8
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	27.25	30.74
Bra035509.1-P	Field mustard	cytosol, plastid	21.56	30.13
CDY44647	Canola	nucleus, plastid	20.96	29.29
CDY62093	Canola	nucleus, plastid	21.86	29.2
Solyc01g110240.1.1	Tomato	cytosol, peroxisome, plastid	16.77	28.0
Solyc01g110230.1.1	Tomato	cytosol	20.96	27.56
Solyc05g056360.1.1	Tomato	cytosol	26.05	26.36
Solyc01g110200.1.1	Tomato	plastid	21.56	25.99
PGSC0003DMT400091031	Potato	cytosol	19.16	25.81
PGSC0003DMT400085334	Potato	peroxisome	20.36	25.37
CDY14020	Canola	plastid	20.66	24.64
KRH18810	Soybean	cytosol	19.76	24.54
Zm00001d053860_P001	Maize	plastid	25.45	24.36
Bra028677.1-P	Field mustard	nucleus, plastid	20.36	24.29
KRH16604	Soybean	cytosol, nucleus, peroxisome	19.76	24.26
PGSC0003DMT400060283	Potato	cytosol	21.86	24.25
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	17.96	24.19
Solyc01g110220.1.1	Tomato	cytosol	17.37	23.77
PGSC0003DMT400090567	Potato	plastid	21.26	23.75
Solyc01g110210.1.1	Tomato	nucleus	17.66	22.96
CDY40768	Canola	nucleus	20.06	22.19
KRH24390	Soybean	nucleus	21.86	20.68
KRH29371	Soybean	nucleus	22.75	20.65
AT5G07930.3	Thale cress	nucleus	17.66	20.07
VIT_18s0001g03840.t01	Wine grape	mitochondrion	17.96	19.8
Zm00001d042445_P001	Maize	nucleus	28.44	14.31
Zm00001d045611_P001	Maize	nucleus	17.66	6.97
Zm00001d035869_P017	Maize	golgi	17.37	6.8
Zm00001d035763_P003	Maize	plastid	18.86	6.65
Zm00001d025278_P025	Maize	nucleus	17.96	6.02
Zm00001d016606_P022	Maize	nucleus	18.26	5.93
Zm00001d050584_P034	Maize	endoplasmic reticulum, nucleus	17.96	5.69
Zm00001d031675_P001	Maize	nucleus	0.9	2.04
Zm00001d008437_P001	Maize	mitochondrion, nucleus, plastid	1.8	1.79
Zm00001d007808_P002	Maize	nucleus	1.8	1.69
Zm00001d008781_P003	Maize	nucleus	0.9	1.6
Zm00001d048798_P001	Maize	nucleus	1.5	1.51
Zm00001d013726_P001	Maize	nucleus	0.9	1.3

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6ETQ7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:ONM23062.1	PFAM:PF04059	PRINTS:PR01217	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf
InterPro:RRM_dom	SUPFAM:SSF54928	UniParc:UPI000221964F	EnsemblPlantsGene:Zm00001d006207	EnsemblPlants:Zm00001d006207_P001	EnsemblPlants:Zm00001d006207_T001
SEG:seg	:	:	:	:	:

Description

RNA recognition motif 2 family protein

Coordinates

chr2:-:201786822..201788703

Molecular Weight (calculated)

36566.6 Da

IEP (calculated)

10.707

GRAVY (calculated)

-0.479

Length

334 amino acids

Sequence
(BLAST)

001: MAPLSHTAPA YIPTKRGAPW IPPPPASGLP TYISWMPTPP PRFLPWPHLA PPPPPPLPCW SVPQVPCATA TGMVQRPLAC VASAAAGNAN EAATNQPSPR
101: SVLAVTSPPI SPTTSLPTSF PYRLAPPAPP PTAGHAAPTP PPTAKRSVAA RPRHGRRSSR VRRTRSAPKP RRLFDPTSEL TSFMIRNIPN DFTRARLIHI
201: LDQHCSIENE KIAPGGVRSQ YDFLYLVVDF RSRANKGYAF VNMTSPEAAR RLWTHLHGHL WAFKSSAKTC AVDYADLQGQ DNLVSHFSGS RFDCDTDEYL
301: PVRFEPPRDG TRPAEGAMNV VGRRITRSRP SDEN

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.