Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086312 | Potato | cytosol, nucleus, plasma membrane, plastid | 33.61 | 33.06 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 25.0 | 30.5 |
| Solyc01g110260.1.1 | Tomato | cytosol | 21.72 | 28.49 |
| Solyc01g110210.1.1 | Tomato | nucleus | 29.1 | 27.63 |
| Solyc01g110230.1.1 | Tomato | cytosol | 28.69 | 27.56 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 15.16 | 26.43 |
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 18.03 | 25.73 |
| Solyc01g110200.1.1 | Tomato | plastid | 27.46 | 24.19 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 16.8 | 23.3 |
| GSMUA_Achr11P... | Banana | cytosol | 15.16 | 23.12 |
| CDY14020 | Canola | plastid | 23.36 | 20.36 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 24.59 | 20.27 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 22.95 | 20.0 |
| AT5G07930.3 | Thale cress | nucleus | 23.77 | 19.73 |
| EES04542 | Sorghum | plastid | 27.05 | 19.02 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 24.18 | 18.73 |
| Solyc05g056360.1.1 | Tomato | cytosol | 25.0 | 18.48 |
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 18.85 | 18.33 |
| CDY40768 | Canola | nucleus | 22.54 | 18.21 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 23.77 | 18.18 |
| Zm00001d053860_P001 | Maize | plastid | 25.41 | 17.77 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 23.77 | 17.42 |
| Zm00001d006207_P001 | Maize | plastid | 23.77 | 17.37 |
| Os09t0531200-01 | Rice | cytosol | 22.54 | 17.03 |
| KRH24390 | Soybean | nucleus | 23.77 | 16.43 |
| KRH29371 | Soybean | nucleus | 24.59 | 16.3 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 22.95 | 16.28 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 16.39 | 16.0 |
| TraesCS5B01G319500.1 | Wheat | plastid | 23.77 | 14.76 |
| OQU89813 | Sorghum | nucleus, plastid | 22.13 | 14.67 |
| TraesCS6B01G159300.2 | Wheat | plastid | 22.95 | 13.66 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 21.72 | 13.62 |
| Solyc05g013930.1.1 | Tomato | nucleus | 26.23 | 10.09 |
| Solyc10g007770.2.1 | Tomato | nucleus, plastid | 27.05 | 7.77 |
| Solyc07g056340.2.1 | Tomato | nucleus | 25.0 | 7.57 |
| Solyc02g071270.1.1 | Tomato | extracellular | 26.23 | 7.56 |
| Solyc05g023740.2.1 | Tomato | nucleus | 25.0 | 6.28 |
Protein Annotations
| EnsemblPlants:Solyc01g110220.1.1 | EnsemblPlantsGene:Solyc01g110220.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Mei2-like | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR45087 |
| PFAM:PF04059 | PRINTS:PR01217 | SEG:seg | SUPFAM:SSF54928 | UniParc:UPI0002768DAB | UniProt:K4B3N5 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:96976240..96977242
Molecular Weight (calculated)
28370.1 Da
IEP (calculated)
9.349
GRAVY (calculated)
-0.535
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MADFPENWLN PHPMHQYLSV PTVPPPPPLH PPTYVNCPLP FAREQYQTVM TTRRQFQPAL PPHQYPPALQ PLPPPVNSLP RENVLPRWNV PPIRRQTLPA
101: VQPPYPPALQ PLPPPPTVNY DKTTILIRNI PFSYNHQRMI HFLDYFCLQE NVNAENTHLF AYDYLYLPYD NRNNKIKGYA IVNFTDTRSL RKFIWSFCDG
201: EKVFPGSKRR VDFTIAYVQG KNALVNTYLH APEAICFNPP RNGY
101: VQPPYPPALQ PLPPPPTVNY DKTTILIRNI PFSYNHQRMI HFLDYFCLQE NVNAENTHLF AYDYLYLPYD NRNNKIKGYA IVNFTDTRSL RKFIWSFCDG
201: EKVFPGSKRR VDFTIAYVQG KNALVNTYLH APEAICFNPP RNGY
001: MASSDDPAPE NNHVSVLARQ ARNPPTHFFF PHNPSPRTYY FSAPPQIYFI SDIYLPPPPS IWVYYPLWYI NPNPNVYEST QELPQRYSPN PSQEMTLPPT
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPDG KEKTQTPNQI QVKF
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPDG KEKTQTPNQI QVKF
Arabidopsis Description
MCT2MEI2 C-terminal RRM only like 2 [Source:UniProtKB/TrEMBL;Acc:F4K9I2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.