Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060283 | Potato | cytosol | 79.09 | 86.71 |
| GSMUA_Achr11P... | Banana | cytosol | 19.7 | 40.62 |
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 20.91 | 40.35 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 20.0 | 37.5 |
| AT1G37140.1 | Thale cress | plastid | 23.64 | 33.48 |
| CDY44647 | Canola | nucleus, plastid | 23.33 | 32.22 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 23.03 | 31.8 |
| CDY62093 | Canola | nucleus, plastid | 23.64 | 31.2 |
| Solyc01g110260.1.1 | Tomato | cytosol | 16.97 | 30.11 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 18.18 | 30.0 |
| Solyc01g110230.1.1 | Tomato | cytosol | 22.42 | 29.13 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 26.06 | 29.05 |
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 21.21 | 27.89 |
| KRH18810 | Soybean | cytosol | 21.82 | 26.77 |
| Solyc01g110200.1.1 | Tomato | plastid | 22.12 | 26.35 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 25.15 | 26.35 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 21.52 | 26.1 |
| Zm00001d006207_P001 | Maize | plastid | 26.36 | 26.05 |
| Os09t0531200-01 | Rice | cytosol | 25.15 | 25.7 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 24.55 | 25.39 |
| EES04542 | Sorghum | plastid | 26.67 | 25.36 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 25.45 | 25.23 |
| Zm00001d053860_P001 | Maize | plastid | 26.67 | 25.21 |
| Solyc01g110220.1.1 | Tomato | cytosol | 18.48 | 25.0 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 25.45 | 24.42 |
| Solyc01g110210.1.1 | Tomato | nucleus | 18.48 | 23.74 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 26.97 | 22.88 |
| OQU89813 | Sorghum | nucleus, plastid | 25.15 | 22.55 |
| VIT_18s0001g03840.t01 | Wine grape | mitochondrion | 20.3 | 22.11 |
| TraesCS5B01G319500.1 | Wheat | plastid | 25.15 | 21.12 |
| TraesCS6B01G159300.2 | Wheat | plastid | 25.15 | 20.24 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 13.64 | 18.0 |
| Solyc05g013930.1.1 | Tomato | nucleus | 31.52 | 16.4 |
| Solyc07g056340.2.1 | Tomato | nucleus | 21.52 | 8.81 |
| Solyc10g007770.2.1 | Tomato | nucleus, plastid | 22.42 | 8.72 |
| Solyc02g071270.1.1 | Tomato | extracellular | 19.09 | 7.44 |
| Solyc05g023740.2.1 | Tomato | nucleus | 19.7 | 6.69 |
Protein Annotations
| EnsemblPlants:Solyc05g056360.1.1 | EnsemblPlantsGene:Solyc05g056360.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:Mei2-like |
| InterPro:Mei2-like_Rrm_C | InterPro:RBD_domain_sf | PANTHER:PTHR45087 | PFAM:PF04059 | SEG:seg | SUPFAM:SSF54928 |
| UniParc:UPI000276570C | UniProt:K4C2W0 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5:+:65699068..65701563
Molecular Weight (calculated)
38148.2 Da
IEP (calculated)
8.345
GRAVY (calculated)
-0.466
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALNPNAEE FKPTNNEKEV VPFNPQGNEL VVYQPPLLPF HVSQPQCHHL GYFYYYQQNV PFYWIHDDLY HQLENTPQTQ SFLAKGEIFS DGVKEKWVWV
101: EKTHQDQSFV DKDEIFSDGM NKNWKNKKPF LPPRLMRTPA SVWKPKGFVM RKPQQENGSS ISSCKSSAAL FSWDKTTVMI RNIPNQFRRE PFMLFLDHYC
201: SLNHWEYDFL YLPMDFRTNN NVGYAFVNFT SGCAASEIRE VLRYFKWTSV ETPTGIFSSR KICVVSWARI QGKDLLVKHF SQSKFICDTD EYLPVVFSPP
301: RNGSSRLTAP MTIGNLAVGP SVSSSSVTTN
101: EKTHQDQSFV DKDEIFSDGM NKNWKNKKPF LPPRLMRTPA SVWKPKGFVM RKPQQENGSS ISSCKSSAAL FSWDKTTVMI RNIPNQFRRE PFMLFLDHYC
201: SLNHWEYDFL YLPMDFRTNN NVGYAFVNFT SGCAASEIRE VLRYFKWTSV ETPTGIFSSR KICVVSWARI QGKDLLVKHF SQSKFICDTD EYLPVVFSPP
301: RNGSSRLTAP MTIGNLAVGP SVSSSSVTTN
001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
Arabidopsis Description
MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.