Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44647 | Canola | nucleus, plastid | 60.09 | 58.58 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 59.23 | 57.74 |
| CDY62093 | Canola | nucleus, plastid | 57.51 | 53.6 |
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 28.33 | 38.6 |
| GSMUA_Achr11P... | Banana | cytosol | 26.18 | 38.12 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 26.61 | 35.23 |
| KRH18810 | Soybean | cytosol | 35.19 | 30.48 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 34.76 | 29.78 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 33.91 | 26.69 |
| Solyc05g056360.1.1 | Tomato | cytosol | 33.48 | 23.64 |
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 24.89 | 23.11 |
| PGSC0003DMT400060283 | Potato | cytosol | 28.33 | 21.93 |
| Zm00001d006207_P001 | Maize | plastid | 30.9 | 21.56 |
| Zm00001d053860_P001 | Maize | plastid | 30.47 | 20.34 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 27.47 | 20.32 |
| EES04542 | Sorghum | plastid | 29.61 | 19.88 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 27.04 | 19.75 |
| Os09t0531200-01 | Rice | cytosol | 27.04 | 19.5 |
| VIT_18s0001g03840.t01 | Wine grape | mitochondrion | 25.32 | 19.47 |
| AT5G07930.3 | Thale cress | nucleus | 24.46 | 19.39 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 27.47 | 19.22 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 27.9 | 18.9 |
| OQU89813 | Sorghum | nucleus, plastid | 29.61 | 18.75 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 30.47 | 18.25 |
| TraesCS6B01G159300.2 | Wheat | plastid | 30.9 | 17.56 |
| TraesCS5B01G319500.1 | Wheat | plastid | 27.47 | 16.29 |
| AT1G67770.1 | Thale cress | plastid | 34.76 | 15.37 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 16.31 | 15.2 |
| AT3G26120.1 | Thale cress | nucleus | 35.62 | 13.5 |
| AT5G61960.1 | Thale cress | nucleus | 23.18 | 5.9 |
| AT1G29400.3 | Thale cress | nucleus | 20.17 | 5.88 |
| AT5G07290.1 | Thale cress | nucleus | 22.32 | 5.73 |
| AT2G42890.1 | Thale cress | nucleus | 18.03 | 4.98 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840631 | ProteinID:AEE31892.1 | ArrayExpress:AT1G37140 | EnsemblPlantsGene:AT1G37140 | RefSeq:AT1G37140 |
| TAIR:AT1G37140 | RefSeq:AT1G37140-TAIR-G | EnsemblPlants:AT1G37140.1 | TAIR:AT1G37140.1 | Unigene:At.51989 | EMBL:DQ056481 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0010187 | Symbol:MCT1 |
| InterPro:Mei2-like | InterPro:Mei2-like_Rrm_C | RefSeq:NP_174902.1 | PFAM:PF04059 | PO:PO:0004507 | PO:PO:0009009 |
| PANTHER:PTHR45087 | UniProt:Q4PT05 | InterPro:RBD_domain_sf | SUPFAM:SSF54928 | UniParc:UPI0000162FE9 | SEG:seg |
Description
MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
Coordinates
chr1:-:14170351..14172040
Molecular Weight (calculated)
26764.4 Da
IEP (calculated)
10.567
GRAVY (calculated)
-0.583
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.