CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006207_P001	Maize	plastid	57.61	63.47
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	29.35	43.03
PGSC0003DMT400008115	Potato	cytosol	15.22	38.89
VIT_03s0038g00390.t01	Wine grape	cytosol	14.67	38.57
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	33.42	38.56
TraesCS7B01G269200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	32.88	38.41
Os09t0531200-01	Rice	cytosol	33.42	38.08
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	32.34	35.74
HORVU5Hr1G081420.2	Barley	mitochondrion	31.52	33.72
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	24.73	30.74
Solyc01g110260.1.1	Tomato	cytosol	15.49	30.65
TraesCS5B01G319500.1	Wheat	plastid	32.34	30.28
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	20.38	30.0
AT1G37140.1	Thale cress	plastid	18.75	29.61
Bra035509.1-P	Field mustard	cytosol, plastid	18.48	28.45
CDY44647	Canola	nucleus, plastid	18.21	28.03
CDY62093	Canola	nucleus, plastid	19.02	28.0
Solyc01g110240.1.1	Tomato	cytosol, peroxisome, plastid	14.4	26.5
Solyc01g110230.1.1	Tomato	cytosol	18.21	26.38
Solyc05g056360.1.1	Tomato	cytosol	22.55	25.15
PGSC0003DMT400085334	Potato	peroxisome	18.21	25.0
Solyc01g110200.1.1	Tomato	plastid	18.75	24.91
Bra028677.1-P	Field mustard	nucleus, plastid	18.21	23.93
CDY14020	Canola	plastid	18.21	23.93
PGSC0003DMT400091031	Potato	cytosol	16.03	23.79
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	16.03	23.79
Solyc01g110210.1.1	Tomato	nucleus	16.58	23.74
KRH16604	Soybean	cytosol, nucleus, peroxisome	17.39	23.53
KRH18810	Soybean	cytosol	17.12	23.42
PGSC0003DMT400090567	Potato	plastid	19.02	23.41
EES04542	Sorghum	plastid	21.47	22.77
PGSC0003DMT400060283	Potato	cytosol	18.21	22.26
CDY40768	Canola	nucleus	18.21	22.19
Solyc01g110220.1.1	Tomato	cytosol	14.67	22.13
KRH29371	Soybean	nucleus	20.92	20.92
KRH24390	Soybean	nucleus	19.84	20.68
AT5G07930.3	Thale cress	nucleus	16.3	20.41
VIT_18s0001g03840.t01	Wine grape	mitochondrion	14.67	17.82
EES01930	Sorghum	nucleus	25.27	13.96
OQU77194	Sorghum	plastid	17.12	7.7
EER89028	Sorghum	nucleus	17.12	7.46
OQU81438	Sorghum	plastid	17.66	6.14
EES05145	Sorghum	nucleus	16.58	6.12

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1W0W636	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlants:OQU89813	ProteinID:OQU89813	ProteinID:OQU89813.1	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087
InterPro:RBD_domain_sf	InterPro:RRM_dom	EnsemblPlantsGene:SORBI_3002G274400	SUPFAM:SSF54928	UniParc:UPI0009DC872B	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:65701038..65702480

Molecular Weight (calculated)

40066.0 Da

IEP (calculated)

10.743

GRAVY (calculated)

-0.554

Length

368 amino acids

Sequence
(BLAST)

001: MPPPPLPEFL PWPHLGAPPP PPPPPPPCWS LPQVACVPGM PTQAPPPADV VPHGAMAMAP PSGQAPGSWP RRHPKAPRKQ RVAGPAPAAT AVASCGVKSA
101: ADAKEAAATN QPSPRSVLAV AVPSPPISPT TSLPTSFPYQ LVLPTAPPAD AAGVAYTAAP SHAEGSVAII RPPQRPRRRP RGPRRARPAS RAHVRHAVKP
201: RRLFDPNSER TSLMIRNIPN DFTRMRLMNI LDEHCFIENE KIEPGGVRSE YDFLYLPIDF RTLANKGYAF VNMTSPEAAR RLWADLDRHR WAFKRSGKTC
301: AVDYADRQGR DPLVEHFSGS RFDCHTEEYL PVRFEPPRDG TRPAEGAVHV VGRLAARPRP RPHAGDGK

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.