Factsheet for PGSC0003DMT400008115

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110260.1.1	Tomato	cytosol	91.67	70.97
VIT_03s0038g00390.t01	Wine grape	cytosol	48.61	50.0
PGSC0003DMT400090567	Potato	plastid	81.25	39.13
PGSC0003DMT400085334	Potato	peroxisome	63.19	33.96
GSMUA_Achr11P...	Banana	cytosol	37.5	33.75
HORVU6Hr1G025080.3	Barley	mitochondrion	35.42	29.82
TraesCS6A01G131000.1	Wheat	mitochondrion	35.42	28.98
PGSC0003DMT400091031	Potato	cytosol	47.92	27.82
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	43.75	25.4
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	36.81	21.12
CDY14020	Canola	plastid	40.28	20.71
Bra028677.1-P	Field mustard	nucleus, plastid	39.58	20.36
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	40.28	19.59
CDY40768	Canola	nucleus	40.28	19.21
AT5G07930.3	Thale cress	nucleus	34.72	17.01
Os09t0531200-01	Rice	cytosol	37.5	16.72
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	37.5	16.22
TraesCS7B01G269200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	35.42	16.19
Zm00001d006207_P001	Maize	plastid	37.5	16.17
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	35.42	15.99
KRH24390	Soybean	nucleus	37.5	15.3
OQU89813	Sorghum	nucleus, plastid	38.89	15.22
KRH29371	Soybean	nucleus	38.89	15.22
HORVU5Hr1G081420.2	Barley	mitochondrion	36.11	15.12
Zm00001d053860_P001	Maize	plastid	34.72	14.33
EES04542	Sorghum	plastid	32.64	13.54
TraesCS5B01G319500.1	Wheat	plastid	36.81	13.49
Os02t0157900-00	Rice	mitochondrion, plastid	35.42	13.11
TraesCS6B01G159300.2	Wheat	plastid	36.11	12.68
PGSC0003DMT400060283	Potato	cytosol	26.39	12.62
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	13.19	7.6
PGSC0003DMT400044564	Potato	nucleus	31.94	5.41
PGSC0003DMT400054712	Potato	nucleus	31.25	5.3
PGSC0003DMT400007982	Potato	nucleus	29.86	5.05
PGSC0003DMT400005752	Potato	nucleus	28.47	4.2
PGSC0003DMT400027957	Potato	nucleus	9.72	2.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400008115	EnsemblPlantsGene:PGSC0003DMG400003129	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:Mei2-like
InterPro:Mei2-like_Rrm_C	InterPro:RBD_domain_sf	PANTHER:PTHR45087	PFAM:PF04059	PGSC:PGSC0003DMG400003129	SUPFAM:SSF54928
UniParc:UPI0002948F63	UniProt:M0ZU35	MapMan:35.1	:	:	:

Description

Protein terminal ear1 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400003129]

Coordinates

chr1:+:86568059..86568658

Molecular Weight (calculated)

16649.9 Da

IEP (calculated)

5.692

GRAVY (calculated)

-0.282

Length

144 amino acids

Sequence
(BLAST)

001: MLMQFLDEHC LLENQKARDS NGENIHIFAY DFLYLPMDFK SKMNKGYAFV NFTDERTVWN FFEVFDKLNV FPGSTWAVKI VTAKIQGKEA LVNHFKNTRF
101: VCESEEFLPV QFSPPRDGSG ESVQMITVGE YKVTPSCSDI LKKP

Best Arabidopsis Sequence Match ( AT1G37140.1 )
(BLAST)

001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR

Arabidopsis Description

MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.