Factsheet for PGSC0003DMT400027957

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013930.1.1	Tomato	nucleus	91.32	69.72
CDY01848	Canola	plastid	39.26	37.85
CDY56219	Canola	plastid	39.67	36.5
Bra004255.1-P	Field mustard	plastid	40.29	35.45
KRH31365	Soybean	nucleus	23.76	35.38
KRG97510	Soybean	nucleus	38.84	34.88
VIT_01s0137g00320.t01	Wine grape	nucleus	46.28	34.04
VIT_14s0219g00270.t01	Wine grape	plastid	39.05	33.81
CDX83589	Canola	nucleus	40.5	33.73
CDX99727	Canola	nucleus	41.74	33.5
CDY40990	Canola	nucleus	42.36	33.5
AT3G26120.1	Thale cress	nucleus	42.36	33.33
Bra036347.1-P	Field mustard	plastid	37.4	33.27
CDY13612	Canola	nucleus	41.74	33.22
Bra025185.1-P	Field mustard	nucleus	41.53	33.06
AT1G67770.1	Thale cress	plastid	35.12	32.26
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	29.34	28.12
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	33.26	28.05
GSMUA_Achr8P32080_001	Banana	nucleus	37.6	26.34
Zm00001d042445_P001	Maize	nucleus	34.92	25.45
Os01t0907900-01	Rice	nucleus	35.54	25.18
TraesCS3A01G413400.1	Wheat	nucleus	34.71	24.71
TraesCS3B01G447800.1	Wheat	nucleus	34.5	24.7
HORVU3Hr1G091930.1	Barley	nucleus	34.5	24.67
TraesCS3D01G407900.1	Wheat	nucleus	34.71	24.6
EES01930	Sorghum	nucleus	33.68	24.47
KRH31364	Soybean	cytosol, nucleus	6.82	19.08
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	9.09	17.74
PGSC0003DMT400091031	Potato	cytosol	8.47	16.53
PGSC0003DMT400085334	Potato	peroxisome	8.26	14.93
PGSC0003DMT400060283	Potato	cytosol	8.88	14.29
PGSC0003DMT400054712	Potato	nucleus	23.76	13.55
PGSC0003DMT400044564	Potato	nucleus	22.93	13.06
PGSC0003DMT400007982	Potato	nucleus	22.52	12.81
PGSC0003DMT400090567	Potato	plastid	7.64	12.37
PGSC0003DMT400005752	Potato	nucleus	23.76	11.78
PGSC0003DMT400008115	Potato	cytosol	2.89	9.72

Protein Annotations

EnsemblPlants:PGSC0003DMT400027957	EnsemblPlantsGene:PGSC0003DMG400010773	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45087	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400010773	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294D1C7	UniProt:M1AQF7	MapMan:35.1	:

Description

Terminal ear1-like 2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010773]

Coordinates

chr5:-:11074323..11076135

Molecular Weight (calculated)

54341.5 Da

IEP (calculated)

9.350

GRAVY (calculated)

-0.545

Length

484 amino acids

Sequence
(BLAST)

001: MENNGMIHGN LDPRAQEFIP TCPFNNNFLP VFPNQFYYPF PSPPPPPPYG DVASVPLLRP AYVSANPPVP TPILPPPSSM STRTLLLCMV PVDVSESIIR
101: RDLEVFGDVR AVQMGRVREG IVTVHFYDLR HAQTALMEIQ QQHMQQQMRL RRHYYEFIEN QNSLPPVPPP AARGLIAGRA VWAQFTFPVT SALVDGNNQG
201: TLVIFNLASQ TSTDSLIHIF QAFGHVKELR ETPMKKHQRF VEFYDVRDAS RALMKMNGYD LNGQQLLIEF SRPGGNNSRR FSKGFQYSSP TKFNNNLYSS
301: PRIAPVYNTS HSQNQKSNYV KGNPSGCSGS ESSGTGGSVQ ESLASLCISN RSNNNVRAGK NKNAKKSNTI SASSSSVTSC SPKRPQKMLQ QANSSSSSRP
401: WKMSWSSKQA KDYDPRFLIK EDAIMESNCR DSRTTVMIKN IPNNQKLLLN MLDNHCIHCN EQIADDDDQP KSSYDFIYLP IDFM

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.