Factsheet for VIT_14s0219g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31364	Soybean	cytosol, nucleus	19.68	63.58
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	41.14	45.54
Solyc05g013930.1.1	Tomato	nucleus	48.84	43.06
CDY01848	Canola	plastid	38.46	42.83
VIT_03s0038g00390.t01	Wine grape	cytosol	10.38	41.43
Bra036347.1-P	Field mustard	plastid	40.07	41.18
CDY56219	Canola	plastid	38.64	41.06
Bra004255.1-P	Field mustard	plastid	39.18	39.82
VIT_01s0137g00320.t01	Wine grape	nucleus	46.87	39.82
PGSC0003DMT400027957	Potato	nucleus	33.81	39.05
CDX83589	Canola	nucleus	40.43	38.9
AT1G67770.1	Thale cress	plastid	36.49	38.71
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	39.0	37.98
CDY13612	Canola	nucleus	40.61	37.34
VIT_00s0239g00110.t01	Wine grape	plastid	7.33	37.27
Bra025185.1-P	Field mustard	nucleus	40.43	37.17
CDY40990	Canola	nucleus	40.61	37.09
AT3G26120.1	Thale cress	nucleus	40.79	37.07
CDX99727	Canola	nucleus	39.71	36.82
GSMUA_Achr8P32080_001	Banana	nucleus	43.47	35.17
Zm00001d042445_P001	Maize	nucleus	38.64	32.53
EES01930	Sorghum	nucleus	38.46	32.28
HORVU3Hr1G091930.1	Barley	nucleus	39.0	32.2
Os01t0907900-01	Rice	nucleus	39.0	31.92
TraesCS3B01G447800.1	Wheat	nucleus	38.46	31.8
TraesCS3A01G413400.1	Wheat	nucleus	38.64	31.76
TraesCS3D01G407900.1	Wheat	nucleus	38.46	31.48
VIT_18s0001g03840.t01	Wine grape	mitochondrion	12.16	22.44
VIT_12s0142g00100.t01	Wine grape	nucleus	23.26	15.33
VIT_10s0003g02670.t01	Wine grape	nucleus	23.43	14.82
VIT_17s0000g00240.t01	Wine grape	nucleus	23.61	13.23
VIT_01s0150g00090.t01	Wine grape	nucleus	23.26	13.13

Protein Annotations

EntrezGene:100266431	wikigene:100266431	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM456567	ProteinID:CAN67825
ProteinID:CAN67825.1	ProteinID:CCB44555	ProteinID:CCB44555.1	ncoils:Coil	InterPro:EAR1_like_RRM3	UniProt:F6GX69
EMBL:FN594962	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EntrezGene:LOC100266431	wikigene:LOC100266431	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000210AC69	ArrayExpress:VIT_14s0219g00270	EnsemblPlantsGene:VIT_14s0219g00270	EnsemblPlants:VIT_14s0219g00270.t01
unigene:Vvi.19650	RefSeq:XP_002271386	RefSeq:XP_002271386.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:26497763..26502551

Molecular Weight (calculated)

62112.7 Da

IEP (calculated)

7.892

GRAVY (calculated)

-0.439

Length

559 amino acids

Sequence
(BLAST)

001: MSQPSLAAGT PLPPAAPGPT RVVLLSCVPT DVSEAAVRME MEGFGEVGAV EMERLRDGIV IVHFYDLRHA EEAVMEIQEQ YMQQQSRLRR FYEYDAMLFG
101: HLGLERQSLV VPVAFPARGL IAGRAVWAQF SAPESTTPTP DGHNQGTLVI SNLDSKLSES KLKEIVQNFG HVKEFREMTP KQQKWFVEFF DTRDAARAFS
201: ELDGKEIYDK KLIIKFSCSG GYGRIKSSTA AATATTSYND INSRKIIHSR TALCSPHVTG GILQSCRSSS VAPSASVHLS QALLPTKRPT FRTENSSRKG
301: IGRSNCGSIA PISSLSLGED GSECTKSSGK FLRKVNYSHQ KVPTVKQPRK RGQKNPDSHF LINVDAIAES NSRDTRTTVM IKNIPNKYSQ KLLLNMLDNH
401: CILSNEKITG DDEPLSSYDF VYLPIDFHNK CNVGYGFVNL TSPQAAWRLY KAFHLQQWEV FNSRKICEVT YARLQGLEAL KQHFKNSKFA CMVDDYLPVM
501: FSPPRDGKQM SEPVPVVGCS ISGISHGRHE EKVDGEMVEE VNGDNGDCSS NPSSKHDDE

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.