Factsheet for VIT_10s0003g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0142g00100.t01	Wine grape	nucleus	71.72	74.76
KRH12823	Soybean	nucleus	71.83	73.67
KRH37781	Soybean	nucleus	71.27	73.09
PGSC0003DMT400007982	Potato	nucleus	64.71	67.22
GSMUA_Achr10P...	Banana	nucleus	61.76	64.77
Solyc02g071270.1.1	Tomato	extracellular	61.88	64.58
VIT_00s0239g00110.t01	Wine grape	plastid	8.03	64.55
EER89028	Sorghum	nucleus	57.47	60.12
Os02t0719800-02	Rice	plasma membrane	57.58	60.02
Zm00001d045611_P001	Maize	nucleus	57.01	59.5
TraesCS7D01G003000.1	Wheat	plastid	57.35	58.28
TraesCS7A01G003100.1	Wheat	plastid	57.13	58.18
Zm00001d035869_P017	Maize	golgi	56.0	58.03
TraesCS4A01G495500.1	Wheat	plastid	57.13	57.65
HORVU7Hr1G000370.12	Barley	nucleus, plastid	57.35	57.09
GSMUA_Achr6P13670_001	Banana	nucleus	36.88	52.75
GSMUA_Achr4P31220_001	Banana	plastid	53.62	52.67
Os02t0319100-01	Rice	nucleus	47.96	52.28
VIT_17s0000g00240.t01	Wine grape	nucleus	47.62	42.18
VIT_01s0150g00090.t01	Wine grape	nucleus	46.83	41.82
GSMUA_Achr3P03100_001	Banana	nucleus	60.07	39.98
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	61.54	39.56
GSMUA_Achr2P20130_001	Banana	nucleus	52.83	38.03
VIT_03s0038g00390.t01	Wine grape	cytosol	5.09	32.14
VIT_18s0001g03840.t01	Wine grape	mitochondrion	9.05	26.4
VIT_14s0219g00270.t01	Wine grape	plastid	14.82	23.43
VIT_01s0137g00320.t01	Wine grape	nucleus	17.42	23.4

Protein Annotations

EntrezGene:100246862	wikigene:100246862	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB55755	ProteinID:CCB55755.1
UniProt:F6HMG6	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100246862	wikigene:LOC100246862	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1
InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127
PANTHER:PTHR44127:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002108B13
ArrayExpress:VIT_10s0003g02670	EnsemblPlantsGene:VIT_10s0003g02670	EnsemblPlants:VIT_10s0003g02670.t01	unigene:Vvi.13920	RefSeq:XP_002271605	RefSeq:XP_002271605.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:4660592..4669905

Molecular Weight (calculated)

96771.3 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.548

Length

884 amino acids

Sequence
(BLAST)

001: MWMIGVGMDR RQSFLQHVGN EADDMERSSD HSSSGPSKIP YVSIPKAVGS GAWGMRPGSD GYNASNDATL FSCSLPVLPH EKLNLNDTEH CCQSIDDAGL
101: DKLQQDVEAG ESLEDDGIHA IGSLLPDDED ELLAGIMDDF DLSGLSNPME DVEEYDLFGS GGGMELEIDP QESLNMGMAK VSLSDGVVGN GLAQYGLPNG
201: SGTVAGEHPY GEHPSRTLFV RNINSNVEDS ELRTLFEQYG AIRTLYTACK HRGFVMISYY DIRAARTAMR ALQNKPLRRR KLDIHFSIPK DNPSDKDVNQ
301: GTLVVFNLDP SVSNDDLRQI FGAYGEVKEI RETPHKRHHK FIEFYDVRAA EAALRSLNRS DIAGKRIKLE PSRPGGARRN LMLQLNQELE QDESRSFRHH
401: VGSPMANSPP GSWAQFSSPI EHSPLQSLSK SPGFRTVSPT TSNHLPGLAS ILNSQISNSV KVAPIGKDQG RGIHVENIFN NTNSNHGTAF QQSHSFSEPN
501: LGPYPGNGSS FGASTSNGSG IETLSGPQFL WGSPAPYSEH TNSSAWQPPS MGHPFASNGQ GRGFPYSGRH GSFLGSSRHH HHHHVGSAPS GVPLERHFGY
601: FPESPEASFM TPVAFGGMGL AHNDGSFMLN MSARAGMNAG ISIPANMSES GSANFRMISS PRLSPMFPGN GPFPGLAPSN IEGLADRGRS RWVENNGNQI
701: DSKKQFQLDL DKILNGEDTR TTLMIKNIPN KYTSKMLLAA IDEYHRGTYD FLYLPIDFKN KCNVGYAFIN MLSPSHIIPF YQAFNGKKWE KFNSEKVASL
801: AYARIQGKAA LVTHFQNSSL MNEDKRCRPI LFHSEGPEAG DQIIQEHLPS NSLNIQVPQP NGSQIGDTPE SPEMVLLCEK PEKS

Best Arabidopsis Sequence Match ( AT1G29400.3 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.