Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98918 | Soybean | plastid | 76.06 | 75.26 |
| KRH46056 | Soybean | nucleus, plastid | 75.94 | 75.23 |
| VIT_10s0003g02670.t01 | Wine grape | nucleus | 74.76 | 71.72 |
| PGSC0003DMT400054712 | Potato | nucleus | 71.7 | 71.61 |
| Solyc10g007770.2.1 | Tomato | nucleus, plastid | 71.46 | 71.38 |
| PGSC0003DMT400044564 | Potato | nucleus | 68.75 | 68.59 |
| Solyc07g056340.2.1 | Tomato | nucleus | 64.74 | 68.11 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 8.02 | 61.82 |
| Bra004728.1-P | Field mustard | nucleus | 43.16 | 49.66 |
| Bra000279.1-P | Field mustard | nucleus | 45.17 | 48.67 |
| AT2G42890.1 | Thale cress | nucleus | 47.17 | 47.45 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 49.76 | 42.28 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 49.06 | 42.02 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 5.31 | 32.14 |
| CDY71762 | Canola | nucleus | 8.49 | 30.0 |
| VIT_18s0001g03840.t01 | Wine grape | mitochondrion | 9.32 | 26.07 |
| VIT_01s0137g00320.t01 | Wine grape | nucleus | 18.16 | 23.4 |
| VIT_14s0219g00270.t01 | Wine grape | plastid | 15.33 | 23.26 |
| Zm00001d008437_P001 | Maize | mitochondrion, nucleus, plastid | 6.72 | 17.01 |
Protein Annotations
| EntrezGene:100245436 | wikigene:100245436 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CCB56395 | ProteinID:CCB56395.1 |
| UniProt:F6HNY9 | EMBL:FN595999 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100245436 | wikigene:LOC100245436 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 |
| InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 |
| PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:TC67389 |
| UniParc:UPI0002107FF2 | ArrayExpress:VIT_12s0142g00100 | EnsemblPlantsGene:VIT_12s0142g00100 | EnsemblPlants:VIT_12s0142g00100.t01 | unigene:Vvi.12189 | RefSeq:XP_002279792 |
| RefSeq:XP_002279792.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:87325..98849
Molecular Weight (calculated)
92714.5 Da
IEP (calculated)
6.414
GRAVY (calculated)
-0.502
Length
848 amino acids
Sequence
(BLAST)
(BLAST)
001: MVALGLEVVE WSSMQRVQFQ IPSLNVPKKI GSGAWGIPHG TDAYHTSSDV SLFSSSLPVL PHEKLHFNDS EHCGHSVDDG SPSLNKLQQD EESKDPLEDV
101: DLNAIGSLLP DDEDELLAGI MDDFDLSGLP TQVEDLEDDL FGSGGGMELD FDIGISKLSL SDGVAGNGIG HYGLPNGVAT VAGEHPYGEH PSRTLFVRNI
201: NSNVEDSELK TLFEQYGDIR TLYTACKHRG FVMISYYDIR AARTAMRALQ NKPLRRRKLD IHFSIPKDNP SEKDINQGTL VVFNLDASVS NDDLRQIFGA
301: YGEVKEIRET PHKRHHKFIE FYDVRAAEAA LRALNRSDIA GKRIKLEPSR PGGARRNLMQ QLSQELEQDE ARSFRHHVGS PVTNSPPGNW AAFSPVEHNP
401: LQAYSHSPGL GNISPINSNH LPGLASILPP HISNSVKIAP IGKDQGRVNH VNQVFTNAKP TQGAAYQISH SVPEQKLSAS PGPISSLGES NSNSSGIGTL
501: SGPQFLWGSP TPYSERPNSS AWPTSSVGHP FVSSGQGQGF PYSNQHGSFL GSHQHHHVGS APSGVPLDRH FGYFPESPET SFMSPVTFGG MGLSRSNGNF
601: AMNVGARAAI NTGVALPGNM TENGLPSFRM LSLPRHGPPF LGNGTYPVSG VTSNEVLAER GRTRRVENSG NQIDSKKQYQ LDLDKIISGE DTRTTLMIKN
701: IPNKYTSKML LAAIDENHRG TYDFLYLPID FKNKCNVGYA FINMVSPSHI IPFYEAFNGK KWEKFNSEKV ASLAYARIQG KAALVTHFQN SSLMNEDKRC
801: RPILFHSEGQ ETVDQEPFAS GNLNICIRQP DGSYSGDSLE SPKGNLED
101: DLNAIGSLLP DDEDELLAGI MDDFDLSGLP TQVEDLEDDL FGSGGGMELD FDIGISKLSL SDGVAGNGIG HYGLPNGVAT VAGEHPYGEH PSRTLFVRNI
201: NSNVEDSELK TLFEQYGDIR TLYTACKHRG FVMISYYDIR AARTAMRALQ NKPLRRRKLD IHFSIPKDNP SEKDINQGTL VVFNLDASVS NDDLRQIFGA
301: YGEVKEIRET PHKRHHKFIE FYDVRAAEAA LRALNRSDIA GKRIKLEPSR PGGARRNLMQ QLSQELEQDE ARSFRHHVGS PVTNSPPGNW AAFSPVEHNP
401: LQAYSHSPGL GNISPINSNH LPGLASILPP HISNSVKIAP IGKDQGRVNH VNQVFTNAKP TQGAAYQISH SVPEQKLSAS PGPISSLGES NSNSSGIGTL
501: SGPQFLWGSP TPYSERPNSS AWPTSSVGHP FVSSGQGQGF PYSNQHGSFL GSHQHHHVGS APSGVPLDRH FGYFPESPET SFMSPVTFGG MGLSRSNGNF
601: AMNVGARAAI NTGVALPGNM TENGLPSFRM LSLPRHGPPF LGNGTYPVSG VTSNEVLAER GRTRRVENSG NQIDSKKQYQ LDLDKIISGE DTRTTLMIKN
701: IPNKYTSKML LAAIDENHRG TYDFLYLPID FKNKCNVGYA FINMVSPSHI IPFYEAFNGK KWEKFNSEKV ASLAYARIQG KAALVTHFQN SSLMNEDKRC
801: RPILFHSEGQ ETVDQEPFAS GNLNICIRQP DGSYSGDSLE SPKGNLED
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.