Factsheet for Zm00001d008437_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008781_P003	Maize	nucleus	39.7	71.12
Zm00001d048798_P001	Maize	nucleus	61.19	61.75
Zm00001d007808_P002	Maize	nucleus	55.82	52.53
Zm00001d013726_P001	Maize	nucleus	28.36	41.13
Zm00001d016606_P022	Maize	nucleus	62.39	20.31
Zm00001d050584_P034	Maize	endoplasmic reticulum, nucleus	55.22	17.55
Zm00001d031675_P001	Maize	nucleus	6.27	14.29
Zm00001d025278_P025	Maize	nucleus	28.66	9.64
Zm00001d035763_P003	Maize	plastid	23.28	8.23
VIT_12s0142g00100.t01	Wine grape	nucleus	17.01	6.72
PGSC0003DMT400054712	Potato	nucleus	16.12	6.36
Solyc10g007770.2.1	Tomato	nucleus, plastid	16.12	6.36
Solyc07g056340.2.1	Tomato	nucleus	15.22	6.33
PGSC0003DMT400044564	Potato	nucleus	14.93	5.88
Bra000279.1-P	Field mustard	nucleus	13.73	5.84
Zm00001d035869_P017	Maize	golgi	14.03	5.51
AT2G42890.1	Thale cress	nucleus	13.73	5.46
Bra004728.1-P	Field mustard	nucleus	11.64	5.29
Zm00001d045611_P001	Maize	nucleus	13.13	5.19
Zm00001d042445_P001	Maize	nucleus	4.18	2.11
Zm00001d006207_P001	Maize	plastid	1.79	1.8
Zm00001d053860_P001	Maize	plastid	0.9	0.86
CDY71762	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	UniProt:A0A1D6FCY5	ProteinID:AQK89886.1	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0016020	GO:GO:0016021	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:IPR009072	PRINTS:PR00623	PANTHER:PTHR44127	PANTHER:PTHR44127:SF1
SUPFAM:SSF47113	TMHMM:TMhelix	UniParc:UPI0008453099	EnsemblPlantsGene:Zm00001d008437	EnsemblPlants:Zm00001d008437_P001	EnsemblPlants:Zm00001d008437_T001
SEG:seg	:	:	:	:	:

Description

Protein MEI2-like 1

Coordinates

chr8:+:8646408..8647853

Molecular Weight (calculated)

36051.5 Da

IEP (calculated)

10.772

GRAVY (calculated)

-0.187

Length

335 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGALRHR KVLRDNIPGI TNLTIRRLAR RGGVKRISGL IYEETRGILK IFLEQCCWFR GSSRAHPARP PRSVAMAQCR HHLLLMVIAA
101: PMSHCTTTCG SSKPTTSSTQ HMSKELGQEE FGIYNLGSPS TNSPSLPSLG MVFIFFIFIV CHVLMSMDAF PDVRIILQGS SNIVAMTSCG RENGSMHGLH
201: SGLLTSMSPF REASFLGLSS TLPQSLSSPI GIASAATHSN QAPLGELSHS LSRMNRHVNY GFQGLGAIHP HSLPDVHNGA NNGTPYNLNT ITPVGVNKNS
301: RTAEAVDSRH LHKVGSGNLN GHSFDRAGEG VVKWW

Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.