Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 17.49 | 30.99 |
| GSMUA_Achr11P... | Banana | cytosol | 15.51 | 29.38 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 13.2 | 28.57 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 16.17 | 27.84 |
| AT1G37140.1 | Thale cress | plastid | 19.47 | 25.32 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 19.47 | 24.69 |
| CDY44647 | Canola | nucleus, plastid | 19.47 | 24.69 |
| CDY62093 | Canola | nucleus, plastid | 20.13 | 24.4 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 21.45 | 23.9 |
| KRH18810 | Soybean | cytosol | 21.12 | 23.79 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 23.1 | 23.65 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 8.25 | 22.73 |
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 16.83 | 20.32 |
| Solyc05g056360.1.1 | Tomato | cytosol | 22.11 | 20.3 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 20.46 | 19.68 |
| EES04542 | Sorghum | plastid | 22.11 | 19.31 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 21.12 | 19.22 |
| PGSC0003DMT400060283 | Potato | cytosol | 18.81 | 18.94 |
| Zm00001d053860_P001 | Maize | plastid | 21.78 | 18.91 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 21.45 | 18.9 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 19.47 | 18.5 |
| Zm00001d006207_P001 | Maize | plastid | 19.8 | 17.96 |
| Os09t0531200-01 | Rice | cytosol | 19.14 | 17.96 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 22.11 | 17.22 |
| TraesCS5B01G319500.1 | Wheat | plastid | 21.12 | 16.29 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 13.2 | 16.0 |
| OQU89813 | Sorghum | nucleus, plastid | 17.82 | 14.67 |
| TraesCS6B01G159300.2 | Wheat | plastid | 19.8 | 14.63 |
| VIT_14s0219g00270.t01 | Wine grape | plastid | 22.44 | 12.16 |
| VIT_01s0137g00320.t01 | Wine grape | nucleus | 24.75 | 11.4 |
| VIT_12s0142g00100.t01 | Wine grape | nucleus | 26.07 | 9.32 |
| VIT_10s0003g02670.t01 | Wine grape | nucleus | 26.4 | 9.05 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 25.74 | 7.82 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 25.08 | 7.68 |
Protein Annotations
| EntrezGene:100855348 | wikigene:100855348 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CCB45519 | ProteinID:CCB45519.1 |
| UniProt:F6H0M2 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR012677 |
| EntrezGene:LOC100855348 | wikigene:LOC100855348 | InterPro:Mei2-like | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF04059 |
| PANTHER:PTHR45087 | InterPro:RBD_domain_sf | SUPFAM:SSF54928 | UniParc:UPI000210A64F | ArrayExpress:VIT_18s0001g03840 | EnsemblPlantsGene:VIT_18s0001g03840 |
| EnsemblPlants:VIT_18s0001g03840.t01 | RefSeq:XP_003634410 | RefSeq:XP_003634410.1 | : | : | : |
Description
No Description!
Coordinates
chr18:+:3555522..3560233
Molecular Weight (calculated)
34091.9 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.438
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQLLNTNP RGSKPLNPNA HAFQPWKSLK AYYLPHHLYE TQERMQLPAA ATVLDFAYQP VSLPLLRYSG LGCYSAQFHH QPLHLRASSI LYPSGDFPIT
101: YVGSTKDSVT EVMEDLGDSV SSRGETRKVS GVPMKKMIAP RLKRSQRRSS MAGGDKNGTS VWRARKFLNG DGCGDDPLPP SDVNAFELSL SGKTTVMIRN
201: IPNKMSRKDM LQLLDECCQV ENRNAELRCD SLRTEYDFVY LPMDFRFKCS NKGYAFVNFT TDVAAFRICK YLHNTTWAAY GTKKICEITG ARIQGHLTSR
301: NIL
101: YVGSTKDSVT EVMEDLGDSV SSRGETRKVS GVPMKKMIAP RLKRSQRRSS MAGGDKNGTS VWRARKFLNG DGCGDDPLPP SDVNAFELSL SGKTTVMIRN
201: IPNKMSRKDM LQLLDECCQV ENRNAELRCD SLRTEYDFVY LPMDFRFKCS NKGYAFVNFT TDVAAFRICK YLHNTTWAAY GTKKICEITG ARIQGHLTSR
301: NIL
001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
Arabidopsis Description
MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.