Factsheet for TraesCS5D01G325200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G081420.2	Barley	mitochondrion	91.59	88.66
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	65.17	86.8
TraesCS5B01G319500.1	Wheat	plastid	97.3	82.44
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	45.95	60.96
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	47.15	49.22
Os09t0531200-01	Rice	cytosol	43.84	45.2
VIT_03s0038g00390.t01	Wine grape	cytosol	16.52	39.29
PGSC0003DMT400008115	Potato	cytosol	16.22	37.5
Zm00001d006207_P001	Maize	plastid	36.64	36.53
OQU89813	Sorghum	nucleus, plastid	35.74	32.34
Solyc01g110260.1.1	Tomato	cytosol	17.42	31.18
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	24.62	27.7
AT1G37140.1	Thale cress	plastid	19.22	27.47
Solyc01g110240.1.1	Tomato	cytosol, peroxisome, plastid	16.22	27.0
Bra035509.1-P	Field mustard	cytosol, plastid	19.22	26.78
CDY44647	Canola	nucleus, plastid	18.92	26.36
PGSC0003DMT400091031	Potato	cytosol	19.52	26.21
KRH18810	Soybean	cytosol	21.02	26.02
CDY62093	Canola	nucleus, plastid	19.52	26.0
Solyc01g110230.1.1	Tomato	cytosol	19.82	25.98
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	19.22	25.81
PGSC0003DMT400085334	Potato	peroxisome	20.72	25.75
Bra028677.1-P	Field mustard	nucleus, plastid	21.62	25.71
Solyc05g056360.1.1	Tomato	cytosol	25.23	25.45
KRH16604	Soybean	cytosol, nucleus, peroxisome	20.72	25.37
Solyc01g110200.1.1	Tomato	plastid	21.02	25.27
CDY14020	Canola	plastid	21.02	25.0
PGSC0003DMT400090567	Potato	plastid	22.22	24.75
Solyc01g110220.1.1	Tomato	cytosol	17.42	23.77
Solyc01g110210.1.1	Tomato	nucleus	18.32	23.74
PGSC0003DMT400060283	Potato	cytosol	21.02	23.26
AT5G07930.3	Thale cress	nucleus	20.42	23.13
CDY40768	Canola	nucleus	20.72	22.85
KRH29371	Soybean	nucleus	24.62	22.28
KRH24390	Soybean	nucleus	22.52	21.25
VIT_18s0001g03840.t01	Wine grape	mitochondrion	19.22	21.12
TraesCS3D01G407900.1	Wheat	nucleus	28.23	13.76
TraesCS7D01G003000.1	Wheat	plastid	16.82	6.44
TraesCS2D01G286200.6	Wheat	nucleus	17.42	6.28
TraesCS1D01G002500.1	Wheat	nucleus	17.42	6.18

Protein Annotations

EnsemblPlants:TraesCS5D01G325200.1	EnsemblPlantsGene:TraesCS5D01G325200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR45087
PFAM:PF04059	SEG:seg	SUPFAM:SSF54928	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:-:416625946..416628639

Molecular Weight (calculated)

36005.3 Da

IEP (calculated)

9.032

GRAVY (calculated)

-0.198

Length

333 amino acids

Sequence
(BLAST)

001: MELAMAAAYT SRLGLSPAAH PYDDASVACA LGQLYSTKDP FALPVSCLLP PPELPPAFGL PVGGLAPVCC CAKAAAAPAF PPFPWAHVPS PPAPPRCAIT
101: EIDESREVES EDNLSPRSVL TPWRRPTPAS ALSPPPPLVV GGKRAFDPSS EKTSLMICNI PNGFVKRRFM AILDQHCVQE NDNPEWRVVG GGKFVRSEYD
201: FLYIPIDFRT KYNKGYAFVN MTTATAARRL HAFLHGHRWA LAGSRKVCEV VHADIQGVDA LSAHFSCSKF PCGNKEFLPV RFGPPRDGLR PTVERVIGRT
301: LVHRPSDQSA RPTPHAAQRG GKSKPAAVGN KTV

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.