Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400085334 | Potato | peroxisome | 64.57 | 61.19 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 45.67 | 58.0 |
| Solyc01g110260.1.1 | Tomato | cytosol | 33.07 | 45.16 |
| Solyc01g110210.1.1 | Tomato | nucleus | 40.94 | 40.47 |
| Solyc01g110200.1.1 | Tomato | plastid | 42.52 | 38.99 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 19.29 | 35.0 |
| GSMUA_Achr11P... | Banana | cytosol | 20.87 | 33.12 |
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 20.08 | 29.82 |
| Solyc01g110220.1.1 | Tomato | cytosol | 27.56 | 28.69 |
| TraesCS6A01G131000.1 | Wheat | mitochondrion | 18.9 | 27.27 |
| CDY14020 | Canola | plastid | 29.13 | 26.43 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 30.71 | 26.35 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 28.35 | 25.71 |
| CDY40768 | Canola | nucleus | 28.35 | 23.84 |
| AT5G07930.3 | Thale cress | nucleus | 27.17 | 23.47 |
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 22.44 | 22.71 |
| Solyc05g056360.1.1 | Tomato | cytosol | 29.13 | 22.42 |
| Zm00001d006207_P001 | Maize | plastid | 27.56 | 20.96 |
| Zm00001d053860_P001 | Maize | plastid | 28.74 | 20.92 |
| Os09t0531200-01 | Rice | cytosol | 26.38 | 20.74 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 25.59 | 20.63 |
| EES04542 | Sorghum | plastid | 27.56 | 20.17 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 25.2 | 20.06 |
| KRH29371 | Soybean | nucleus | 28.74 | 19.84 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 25.98 | 19.82 |
| KRH24390 | Soybean | nucleus | 27.17 | 19.55 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 24.8 | 18.31 |
| OQU89813 | Sorghum | nucleus, plastid | 26.38 | 18.21 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 26.77 | 17.48 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 16.54 | 16.8 |
| TraesCS5B01G319500.1 | Wheat | plastid | 25.59 | 16.54 |
| TraesCS6B01G159300.2 | Wheat | plastid | 25.2 | 15.61 |
| Solyc05g013930.1.1 | Tomato | nucleus | 27.95 | 11.2 |
| Solyc10g007770.2.1 | Tomato | nucleus, plastid | 22.05 | 6.6 |
| Solyc07g056340.2.1 | Tomato | nucleus | 19.68 | 6.2 |
| Solyc02g071270.1.1 | Tomato | extracellular | 19.29 | 5.79 |
| Solyc05g023740.2.1 | Tomato | nucleus | 18.5 | 4.84 |
Protein Annotations
| EnsemblPlants:Solyc01g110230.1.1 | EnsemblPlantsGene:Solyc01g110230.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Mei2-like | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR45087 |
| PFAM:PF04059 | SEG:seg | SUPFAM:SSF54928 | UniParc:UPI0002768DAC | UniProt:K4B3N6 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1:+:96980381..96981393
Molecular Weight (calculated)
28589.7 Da
IEP (calculated)
9.905
GRAVY (calculated)
-0.432
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPENSLN PHAPEYIPIT TPTPPPPPPP PPPPPHPTHL LLRRRGQSLP VMLPTHAAST ALPPPLPPLL PLPRPRPLRP LLPLPPLLPL PTVDSWRTTV
101: MMKNIPSHFN RKKLIKFLDK YCSLENEKAR DLNEENPHVF AYDFLYLPTN FKATTNPGYG FVNFTDHRTL PKIFKHFNER AIKYPNSARN VRMDIANIQG
201: RIALVNRYEN TTFVSKSEEC LPVVFNPARN GSGEETVQVI TVGKFQAVPD IPID
101: MMKNIPSHFN RKKLIKFLDK YCSLENEKAR DLNEENPHVF AYDFLYLPTN FKATTNPGYG FVNFTDHRTL PKIFKHFNER AIKYPNSARN VRMDIANIQG
201: RIALVNRYEN TTFVSKSEEC LPVVFNPARN GSGEETVQVI TVGKFQAVPD IPID
001: MASSDDPAPE NNHVSVLARQ ARNPPTHFFF PHNPSPRTYY FSAPPQIYFI SDIYLPPPPS IWVYYPLWYI NPNPNVYEST QELPQRYSPN PSQEMTLPPT
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV
Arabidopsis Description
MCT2MEI2 C-terminal RRM only like 2 [Source:UniProtKB/TrEMBL;Acc:F4K9I2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.