Factsheet for Solyc05g013930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027957	Potato	nucleus	69.72	91.32
KRH31364	Soybean	cytosol, nucleus	18.45	67.63
KRG97510	Soybean	nucleus	43.85	51.58
CDY01848	Canola	plastid	40.38	51.0
VIT_14s0219g00270.t01	Wine grape	plastid	43.06	48.84
Bra036347.1-P	Field mustard	plastid	41.48	48.35
CDY56219	Canola	plastid	40.06	48.29
CDX99727	Canola	nucleus	44.8	47.1
Bra004255.1-P	Field mustard	plastid	40.85	47.09
VIT_01s0137g00320.t01	Wine grape	nucleus	48.58	46.81
CDY40990	Canola	nucleus	45.11	46.73
CDX83589	Canola	nucleus	42.74	46.64
AT3G26120.1	Thale cress	nucleus	44.48	45.85
CDY13612	Canola	nucleus	43.69	45.56
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	36.28	45.54
Bra025185.1-P	Field mustard	nucleus	43.53	45.39
AT1G67770.1	Thale cress	plastid	36.44	43.83
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	38.01	41.99
GSMUA_Achr8P32080_001	Banana	nucleus	42.59	39.07
KRH31365	Soybean	nucleus	19.56	38.15
Zm00001d042445_P001	Maize	nucleus	39.75	37.95
EES01930	Sorghum	nucleus	39.27	37.39
Os01t0907900-01	Rice	nucleus	40.22	37.34
TraesCS3A01G413400.1	Wheat	nucleus	39.75	37.06
TraesCS3B01G447800.1	Wheat	nucleus	39.27	36.83
HORVU3Hr1G091930.1	Barley	nucleus	39.27	36.78
TraesCS3D01G407900.1	Wheat	nucleus	39.43	36.6
Solyc01g110260.1.1	Tomato	cytosol	9.31	31.72
Solyc05g056360.1.1	Tomato	cytosol	16.4	31.52
Solyc01g110240.1.1	Tomato	cytosol, peroxisome, plastid	9.46	30.0
Solyc01g110230.1.1	Tomato	cytosol	11.2	27.95
Solyc01g110220.1.1	Tomato	cytosol	10.09	26.23
Solyc01g110210.1.1	Tomato	nucleus	10.41	25.68
Solyc01g110200.1.1	Tomato	plastid	10.73	24.55
Solyc10g007770.2.1	Tomato	nucleus, plastid	24.92	18.61
Solyc07g056340.2.1	Tomato	nucleus	23.34	18.36
Solyc02g071270.1.1	Tomato	extracellular	23.5	17.59
Solyc05g023740.2.1	Tomato	nucleus	24.45	15.95

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ncoils:Coil	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4BYB4	InterPro:Mei2-like
InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc05g013930.1	EnsemblPlants:Solyc05g013930.1.1
UniParc:UPI00027660AE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:7385997..7388876

Molecular Weight (calculated)

70862.5 Da

IEP (calculated)

8.702

GRAVY (calculated)

-0.581

Length

634 amino acids

Sequence
(BLAST)

001: MENNGIIHGN LDPRAQEFTP TYPFNNNFLP VFPNQFYYPF SCPPPPHPPP PYADVAPVPL LRPAYLSANP PVPTPILPPP SSMSTRTLLL CMVPVDVSES
101: IIRRELEVFG DVRAVQMGRV REGIVTVHFY DLRNAQTALM EIQQQHMQQQ MRLRRHYYEF IENQNSIPPV PPPTARGLIA GKAVWAQFTF PVTSALVDGN
201: NQGTLVIFNL SPQTSADSLF HLFQAFGHVK ELRETPMKKH QRFVEFYDVR DASRALMEMN GYDLNGQPLL IEFSRPGGNN SRRFSKGFQY SSPTKFNNNY
301: SPPRIAPVYN TSPSQNQKSN YVKGNPSGCS GSESSGTGGS VQESFASLCV SNNSNVRIGK NKNARKSNHH SISASSSSVT SCSPKRPQKL FQQQANSSSS
401: RPWKMGWSSK QAKDYDPRFL IKEDAIMESN CRDSRTTVMI KNIPNKYSQK LLLNMLDNHC IHCNEQIADG DDQPKSSYDF VYLPIDFINK CNVGYGFVNM
501: TSPQATLRLY KAFHLQNWEV FNSRKICQVT YARLQGIEAL KDHFKNSKFP CEAEEYMPVI FSPPRDGKYL TEPNPIVGGG IINSSSSNSN DENEETAAAG
601: RNGGSSSSNS NGENYNVGND DSSTFTCVRM LAGK

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.