Factsheet for Bra025185.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13612	Canola	nucleus	99.51	99.51
Bra036347.1-P	Field mustard	plastid	71.71	80.15
AT3G26120.1	Thale cress	nucleus	79.11	78.21
KRH31364	Soybean	cytosol, nucleus	16.78	58.96
Bra004255.1-P	Field mustard	plastid	41.12	45.45
KRG97510	Soybean	nucleus	38.65	43.6
Solyc05g013930.1.1	Tomato	nucleus	45.39	43.53
PGSC0003DMT400027957	Potato	nucleus	33.06	41.53
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	33.72	40.59
VIT_14s0219g00270.t01	Wine grape	plastid	37.17	40.43
VIT_01s0137g00320.t01	Wine grape	nucleus	43.75	40.43
KRH31365	Soybean	nucleus	20.07	37.54
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	35.36	37.46
EES01930	Sorghum	nucleus	37.34	34.08
Zm00001d042445_P001	Maize	nucleus	36.35	33.28
GSMUA_Achr8P32080_001	Banana	nucleus	37.66	33.14
Bra035509.1-P	Field mustard	cytosol, plastid	12.83	32.64
Os01t0907900-01	Rice	nucleus	36.51	32.5
TraesCS3B01G447800.1	Wheat	nucleus	35.53	31.95
HORVU3Hr1G091930.1	Barley	nucleus	35.2	31.61
TraesCS3D01G407900.1	Wheat	nucleus	35.36	31.48
TraesCS3A01G413400.1	Wheat	nucleus	34.87	31.18
Bra028677.1-P	Field mustard	nucleus, plastid	12.66	27.5
Bra013285.1-P	Field mustard	nucleus	23.19	21.23
Bra030135.1-P	Field mustard	nucleus	23.19	19.16
Bra032316.1-P	Field mustard	nucleus	23.36	17.93
Bra004728.1-P	Field mustard	nucleus	21.71	17.91
Bra000279.1-P	Field mustard	nucleus	22.2	17.15
Bra009274.1-P	Field mustard	nucleus	20.89	14.35
Bra029297.1-P	Field mustard	nucleus	20.89	14.24
Bra010044.1-P	Field mustard	nucleus	20.23	13.43

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra025185	EnsemblPlants:Bra025185.1	EnsemblPlants:Bra025185.1-P	InterPro:EAR1_like_RRM3
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4E8S9	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000253F708	SEG:seg	:	:	:	:

Description

AT3G26120 (E=5e-222) TEL1 | TEL1 (TERMINAL EAR1-LIKE 1); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA06:-:22900621..22903235

Molecular Weight (calculated)

68508.2 Da

IEP (calculated)

7.286

GRAVY (calculated)

-0.554

Length

608 amino acids

Sequence
(BLAST)

001: MENFRAFPFA GNLDPRAQEF VPLNPMSSRF HFPYTSLPPP PLPPPPPSYG LSPSDPRMFT FFNIPPHPMM FPPAPHPPPP PPPPPRPWFN GFSAVQRPSP
101: PSNSPTRSLS LIYVPRDVTE STVRRDLEVF GDVRGVQMER ISEGVVTVHF YDLRGAKRAV REFCGRHMQH QERLGSSSGG GSVWRSPSSS ARGFVSGRPV
201: WAHFVVPDTN AVPGGCNQGT LVIFNLDPEV SSIALRQIFQ VYGSIKELRE TPYKKHQRFI EFYDVRDAVN AFDRMNSEEI YGKQVVIEFS RPGGLKNKFT
301: PFRQPQLPFQ PRPVLLTPPL KQSVILTNGK SKNVSPNNGV DVVEASMRSL CDIDDEAEPE TKSKNVAKLG RKKQMKSMEL SQFLISEETM DDPSCRDPRT
401: TLMIKNIPNK YSQKLLLNML DNHCIHINEA ITEEERDEHK AHHDQPISSY DFVYLPMDFN NKCNVGYGFV NMTSPEAAWR LYKAFHRQRW EIFNSHKICQ
501: ITYARVQGLE DLKEHFRSSR FPCEAELYLP VVFSPPRDGK QLTEPVSINI NDCTGLNNIH HLEPIDGPDH SVGGSCCGSD NDNSQEDGLS GNNIDGGRSF
601: TVVGATSF

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.