Factsheet for Bra036347.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40990	Canola	nucleus	98.9	87.91
CDX99727	Canola	nucleus	96.32	86.9
AT3G26120.1	Thale cress	nucleus	81.99	72.52
Bra025185.1-P	Field mustard	nucleus	80.15	71.71
KRH31364	Soybean	cytosol, nucleus	19.49	61.27
Bra004255.1-P	Field mustard	plastid	43.2	42.73
KRG97510	Soybean	nucleus	41.54	41.93
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	38.6	41.58
Solyc05g013930.1.1	Tomato	nucleus	48.35	41.48
VIT_14s0219g00270.t01	Wine grape	plastid	41.18	40.07
VIT_01s0137g00320.t01	Wine grape	nucleus	45.96	37.99
PGSC0003DMT400027957	Potato	nucleus	33.27	37.4
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.95	35.02
KRH31365	Soybean	nucleus	20.22	33.85
Zm00001d042445_P001	Maize	nucleus	38.79	31.78
EES01930	Sorghum	nucleus	38.79	31.68
GSMUA_Achr8P32080_001	Banana	nucleus	39.89	31.4
Os01t0907900-01	Rice	nucleus	38.79	30.89
TraesCS3B01G447800.1	Wheat	nucleus	37.87	30.47
HORVU3Hr1G091930.1	Barley	nucleus	37.68	30.28
TraesCS3D01G407900.1	Wheat	nucleus	37.87	30.16
TraesCS3A01G413400.1	Wheat	nucleus	37.5	30.0
Bra035509.1-P	Field mustard	cytosol, plastid	13.05	29.71
Bra028677.1-P	Field mustard	nucleus, plastid	11.58	22.5
Bra013285.1-P	Field mustard	nucleus	24.45	20.03
Bra030135.1-P	Field mustard	nucleus	24.45	18.07
Bra032316.1-P	Field mustard	nucleus	24.45	16.79
Bra004728.1-P	Field mustard	nucleus	22.24	16.42
Bra000279.1-P	Field mustard	nucleus	22.61	15.63
Bra009274.1-P	Field mustard	nucleus	22.24	13.67
Bra029297.1-P	Field mustard	nucleus	21.88	13.34
Bra010044.1-P	Field mustard	nucleus	20.96	12.45

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra036347	EnsemblPlants:Bra036347.1	EnsemblPlants:Bra036347.1-P	InterPro:EAR1_like_RRM3
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4F5J1	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF101447
SUPFAM:SSF54928	UniParc:UPI0002545B85	SEG:seg	:	:	:

Description

AT3G26120 (E=4e-237) TEL1 | TEL1 (TERMINAL EAR1-LIKE 1); RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA02:-:22796867..22799470

Molecular Weight (calculated)

60849.4 Da

IEP (calculated)

7.515

GRAVY (calculated)

-0.494

Length

544 amino acids

Sequence
(BLAST)

001: MFSPPPPPPP PPPPRPYFNG VSAVQRLPFQ SKSPTRSLSL ISVPRDVTES TVRRDLEVFG DVRGVQMERI SEGIVTVHFY DLRDAKKAVR EICGRHMQHQ
101: AKVGGSGSVW SLPSSSSPVR GFVSGRPVWA QFVVPATSAV PNGCNQGTLV VFNLDPEVSS IALRQIFQVY GPIKELRETP YKKHQRFVEF YDVRDAAKAF
201: DGMNGEEICG KQVVIEYSRP GGIKNKFRSL RQPHVLFQPF QPAQPPPILA PPMRQSLTLM KDKNKNVSPN NGVAVVEASM GSLCINDDED NKIRGAESET
301: KSKNVAKWGK KRHMKSMELS QFLISEETMD DPSCRDPRTT LMIKNIPNKY SQKLLLNMLD NHCVHINEAI TEGKDEHEAH QQPFSSYDFV YLPMDFNNKC
401: NVGYGFVNMT SPEAAWRLYK AFHLQRWEVF NSQKICQITY ARVQGLEDLK EHFKSAKFPC EAELYLPVVF TPPRDGKQLT EPVSININGC TGLDSKHLEP
501: MDGQDLSVSG SCCGSDHYNS QEDDFSSSSI DGGQGLTVVG ETSF

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.