CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40990	Canola	nucleus	98.51	97.06
Bra036347.1-P	Field mustard	plastid	86.9	96.32
CDX83589	Canola	nucleus	77.78	80.72
AT3G26120.1	Thale cress	nucleus	82.09	80.49
CDY13612	Canola	nucleus	79.93	79.28
KRH31364	Soybean	cytosol, nucleus	17.58	61.27
CDY01848	Canola	plastid	41.96	50.4
CDY56219	Canola	plastid	41.29	47.34
Solyc05g013930.1.1	Tomato	nucleus	47.1	44.8
KRG97510	Soybean	nucleus	39.64	44.34
PGSC0003DMT400027957	Potato	nucleus	33.5	41.74
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	34.66	41.39
VIT_01s0137g00320.t01	Wine grape	nucleus	44.11	40.43
VIT_14s0219g00270.t01	Wine grape	plastid	36.82	39.71
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.48	38.33
KRH31365	Soybean	nucleus	20.23	37.54
Zm00001d042445_P001	Maize	nucleus	38.14	34.64
EES01930	Sorghum	nucleus	38.14	34.53
GSMUA_Achr8P32080_001	Banana	nucleus	38.81	33.86
Os01t0907900-01	Rice	nucleus	37.81	33.38
TraesCS3B01G447800.1	Wheat	nucleus	36.65	32.69
HORVU3Hr1G091930.1	Barley	nucleus	36.65	32.64
TraesCS3D01G407900.1	Wheat	nucleus	36.65	32.36
TraesCS3A01G413400.1	Wheat	nucleus	36.48	32.35
CDY44647	Canola	nucleus, plastid	12.44	31.38
CDY62093	Canola	nucleus, plastid	12.6	30.4
CDY14020	Canola	plastid	12.6	27.14
CDY40768	Canola	nucleus	12.27	24.5
CDY61671	Canola	nucleus	23.22	21.08
CDX78826	Canola	nucleus	23.22	21.05
CDY15631	Canola	nucleus	22.72	18.61
CDX94663	Canola	nucleus	22.06	18.05
CDY48336	Canola	nucleus	22.72	17.72
CDX99820	Canola	nucleus	22.89	17.42
CDX83512	Canola	nucleus	22.06	16.9
CDX79841	Canola	nucleus	21.39	16.65
CDY42812	Canola	nucleus	21.72	16.52
CDY42813	Canola	nucleus	21.89	16.16
CDY60197	Canola	endoplasmic reticulum, plasma membrane	21.23	15.84
CDX70025	Canola	nucleus	20.9	14.19
CDY30687	Canola	nucleus	19.9	14.04
CDX98985	Canola	nucleus	20.56	14.01
CDY30686	Canola	nucleus	12.11	13.77
CDY00238	Canola	nucleus	18.74	12.36
CDX86947	Canola	nucleus	18.57	12.32
CDY71762	Canola	nucleus	1.82	4.58
CDY72437	Canola	nucleus	1.82	4.38

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078EFA5	EnsemblPlants:CDX99727	ProteinID:CDX99727	ProteinID:CDX99727.1
InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00108352001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EDB9BF	SEG:seg	:	:	:	:

Description

BnaC02g35930D

Coordinates

chrLK031913:-:496208..498968

Molecular Weight (calculated)

67624.6 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.480

Length

603 amino acids

Sequence
(BLAST)

001: MEDSRAFPLD PRAQEFVPLN PISSRFYFPY TSPPPPPFPT PPPSSYGLSP TVPRVFTFFN LPPHPMMFSP PPPPLPPPPR PYFNGVSAVQ RLPFQSKSPT
101: RSLSLISVPR DATESTVRRD LEVFGDVRGV QMERISEGIV TVHFYDLRDA KRAVREICGR HMQHQAKVGG SGSVWSLPSS SSPVRGFVSG RPVWAQFVVQ
201: ATSAVPNGCN QGTLVVFNLN PEVSSIALRQ IFQVYGPIKE LRETPYKKHQ RFVEFYDVRD AAKALDGMNG EEICGKEVVI EYSRPGGIKN KFRSLRQPHV
301: LFQPPPILAP PMRQPLTLMK DKNKNVSPNN GVSVVEASMG SLCIKDNEHN KIRGAESETK SKNVAKWGKK RHMKSMELSQ FLISEETMDD PSCRDPRTTL
401: MIKNIPNKYS QKLLLNMLDN HCVHINEAIT EGKDEHEAHH QPFSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRLYKA FHLQRWEVFN SQKICQITYA
501: RVQGLEDLKE HFKSAKFPCE AELYLPVVFT PPRDGKQLTE PVSININGCT GLDSKHLEPM DGQDLSVSGS CCGSDHYNSQ EDDFSSSSID GGQGLTVVGE
601: TSF

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.