CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01848	Canola	plastid	88.59	92.83
Bra004255.1-P	Field mustard	plastid	96.96	92.73
AT1G67770.1	Thale cress	plastid	62.36	62.24
KRH31364	Soybean	cytosol, nucleus	17.68	53.76
CDX83589	Canola	nucleus	46.39	42.0
KRG97510	Soybean	nucleus	42.78	41.74
CDX99727	Canola	nucleus	47.34	41.29
CDY40990	Canola	nucleus	47.91	41.18
CDY13612	Canola	nucleus	47.15	40.79
Solyc05g013930.1.1	Tomato	nucleus	48.29	40.06
PGSC0003DMT400027957	Potato	nucleus	36.5	39.67
VIT_14s0219g00270.t01	Wine grape	plastid	41.06	38.64
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	35.93	37.43
VIT_01s0137g00320.t01	Wine grape	nucleus	46.58	37.23
KRH31365	Soybean	nucleus	22.24	36.0
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	38.21	35.02
GSMUA_Achr8P32080_001	Banana	nucleus	41.63	31.69
Zm00001d042445_P001	Maize	nucleus	39.73	31.48
CDY44647	Canola	nucleus, plastid	14.07	30.96
HORVU3Hr1G091930.1	Barley	nucleus	39.73	30.87
Os01t0907900-01	Rice	nucleus	39.92	30.75
TraesCS3B01G447800.1	Wheat	nucleus	39.35	30.62
TraesCS3A01G413400.1	Wheat	nucleus	39.54	30.59
EES01930	Sorghum	nucleus	38.4	30.33
TraesCS3D01G407900.1	Wheat	nucleus	38.97	30.01
CDY62093	Canola	nucleus, plastid	14.07	29.6
CDY14020	Canola	plastid	15.21	28.57
CDY40768	Canola	nucleus	15.02	26.16
CDX78826	Canola	nucleus	25.1	19.85
CDY61671	Canola	nucleus	24.9	19.73
CDY15631	Canola	nucleus	24.71	17.66
CDX94663	Canola	nucleus	24.33	17.37
CDY48336	Canola	nucleus	25.29	17.21
CDX99820	Canola	nucleus	25.29	16.79
CDX79841	Canola	nucleus	23.95	16.26
CDX83512	Canola	nucleus	24.14	16.14
CDY42812	Canola	nucleus	23.57	15.64
CDY60197	Canola	endoplasmic reticulum, plasma membrane	23.76	15.47
CDY42813	Canola	nucleus	23.57	15.18
CDY30686	Canola	nucleus	13.69	13.58
CDY30687	Canola	nucleus	21.86	13.45
CDX70025	Canola	nucleus	22.62	13.4
CDX98985	Canola	nucleus	22.43	13.33
CDX86947	Canola	nucleus	20.34	11.77
CDY00238	Canola	nucleus	20.34	11.71
CDY71762	Canola	nucleus	2.66	5.83
CDY72437	Canola	nucleus	2.66	5.58

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078J067	UniProt:A0A078J067	EnsemblPlants:CDY56219	ProteinID:CDY56219
ProteinID:CDY56219.1	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00017987001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF22D1	SEG:seg	:	:

Description

BnaAnng14160DBnaAnng14160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J067]

Coordinates

chrLK033469:-:43418..45603

Molecular Weight (calculated)

59448.5 Da

IEP (calculated)

9.127

GRAVY (calculated)

-0.417

Length

526 amino acids

Sequence
(BLAST)

001: MSQTGYPGHL NPTAPMFLPA NLNPVPFFIP TRIYLPLPPH PPPPPPPPYP RFFSCFAGPL PPAPPPHLPP SLSIPTRTLV LLPVPADVSE SSIRRDLEVF
101: GEVRGVQMER AHEGIVIVHF YDLRHSRTAL REIRERHMHQ QQVRFGRGYT AARGLVSGRT VWAHFVFPHF RAVPEGNNQG SLVIMNLEPT VSSAALRQIF
201: EAYGQVKELR DTPFKREQRF VEFYDVRDAA LARREMDGKA IDGKPIIVQF SRPGGFNKKL ILASRFNKSF LSNIHHPPPP PPPQPHFRRQ VPTPASQLRR
301: RGPVKGKPNS IVDGRFTIHE DAIAESRDGR TTVMIKNIPN KYTQKLLLDM LDAHCNDCNE EIVSEGNQTP MSSYDFVYLP IDFGNKCNMG YGFVNMTTPE
401: AVWRLYKAFH NNHWRLFQSS KICEVTYARV QGLESLKEHF KHLKLPCVEM EYKPVIFSPA RDGRLMTKPI AIVVDLGTRP VEDSCPSRAE TVTSCSFSIE
501: RSDGWLGERT EDGGVSDDEG ETVVKI

Best Arabidopsis Sequence Match ( AT1G67770.1 )
(BLAST)

001: MSVTGPFSHP TNLNPTAPAF FPAINQHQNQ NPSLIPTRFF LPHPPPPPPP PPPPLYFSYF SLPPPPPPPH LPPTSVTPTR AVMLLQVPAT VTETSLRRDM
101: ELFGEVRGVQ MERAHEGIVI FHFYNLINSQ RAFNEIRYRH MQQQEQQQHF HFTTARGLVS GHSLWAHFVF PQLNAVPEGN NQGSLVIMNL EPTVSSSTLR
201: HIFQVYGEVK QVRETPCKRE QRFVEFFDVR DAAKALRVMN GKVISGKPMV IQFSRPGGLT KKLFFASHFH KNFIFNNEHH YYPPPPPPSR MVKSDILMYK
301: QQQKKKKKKY VKKNLGDPYF MINENAITGG EFRDGRTTVM IKNIPNKYTQ KLLLKMLDTH CKDCNQSVIK EGNKTPMSSY DFVYLPIDFS NKSNVGYGFV
401: NMTSPEAVWR LYKSFHNQHW RDFTTTRKIC EVTYARIQGL ESLREHFKNV RLAGVEIDEY MPVVFSPPRD GRLSPEPVAI VDPWDKPVDD EDRCCKSRDG
501: FVVSDKKMVG SDGCGFCLSE RIENGGV

Arabidopsis Description

TEL2F12A21.10 [Source:UniProtKB/TrEMBL;Acc:Q9FXE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.