Factsheet for Os01t0907900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042445_P001	Maize	nucleus	68.08	70.03
EES01930	Sorghum	nucleus	68.08	69.82
TraesCS3B01G447800.1	Wheat	nucleus	67.2	67.9
HORVU3Hr1G091930.1	Barley	nucleus	66.76	67.36
TraesCS3A01G413400.1	Wheat	nucleus	67.06	67.35
TraesCS3D01G407900.1	Wheat	nucleus	67.2	67.2
KRH31364	Soybean	cytosol, nucleus	16.54	65.32
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	36.31	49.11
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.31	43.21
GSMUA_Achr8P32080_001	Banana	nucleus	42.31	41.82
CDY01848	Canola	plastid	30.45	41.43
KRG97510	Soybean	nucleus	31.92	40.45
Solyc05g013930.1.1	Tomato	nucleus	37.34	40.22
CDY56219	Canola	plastid	30.75	39.92
VIT_14s0219g00270.t01	Wine grape	plastid	31.92	39.0
Bra036347.1-P	Field mustard	plastid	30.89	38.79
Bra004255.1-P	Field mustard	plastid	31.04	38.55
AT1G67770.1	Thale cress	plastid	29.72	38.52
CDX83589	Canola	nucleus	32.21	37.87
VIT_01s0137g00320.t01	Wine grape	nucleus	36.46	37.84
CDX99727	Canola	nucleus	33.38	37.81
CDY40990	Canola	nucleus	33.38	37.25
AT3G26120.1	Thale cress	nucleus	33.09	36.75
CDY13612	Canola	nucleus	32.65	36.68
Bra025185.1-P	Field mustard	nucleus	32.5	36.51
PGSC0003DMT400027957	Potato	nucleus	25.18	35.54
Os09t0531200-01	Rice	cytosol	13.32	28.17
KRH31365	Soybean	nucleus	12.88	27.08
Os02t0157900-00	Rice	mitochondrion, plastid	13.03	22.88
Os02t0319100-01	Rice	nucleus	19.91	16.77
Os02t0719800-02	Rice	plasma membrane	20.06	16.16
Os05t0102800-01	Rice	nucleus	20.5	14.66
Os02t0517531-01	Rice	nucleus, plasma membrane	19.62	13.39

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4324983	EMBL:AB244276	ProteinID:BAB92568.1	ProteinID:BAD82750.1
ProteinID:BAF07053.1	ProteinID:BAS75804.1	InterPro:EAR1_like_RRM3	ProteinID:EAZ14552.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	InterPro:IPR000504	InterPro:IPR012677
InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0907900	EnsemblPlants:Os01t0907900-01	PFAM:PF00076
PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	UniProt:Q0JGS5	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000009DED1	RefSeq:XP_015646802.1	SEG:seg	:

Description

PLASTOCHRON 2MEI2-like RNA binding protein, Regulation of leaf initiation and maturation (Os01t0907900-01)

Coordinates

chr1:+:39523638..39527194

Molecular Weight (calculated)

71782.9 Da

IEP (calculated)

6.824

GRAVY (calculated)

-0.385

Length

683 amino acids

Sequence
(BLAST)

001: MEEGGGSGVG GMQGAASNLL DAGAQAFYPA VGAPFPFQQL PHQLYCPQPP PPPYQVMPVP PPPPPVGLPV PPLPATMAPQ PGYCVPAAAT VVDGPASRAV
101: VLSLVPPHAP EDEIARAMAP FGAVRAVDAS AVASEGVATV YFFDLRSAEH AVTGVREQHI RQQCRLGQLY AAAAAAAASS PTWPPPAWDW PHDDNRGLVL
201: GQAVWAHFAA ASTVPDDGAS RGSLVVLNSL PAMSVFELRE IFQAYGDVKD VRESALRPSN KFVEFFDTRD ADRALHELNG KELFGRRLVV EYTRPSLPGP
301: RRRGHVSHQP LAPTPPRLQA AWRPAPAPSQ SAQPSSSGSG KAREGVVLLR RSSGKGSSGS QSKGGGNAGH ERKSKGGKSA AAACSTAASA SSSTATAPSK
401: QSQKGGGGGG GRGGSWRGQK SGWEARFLFK EPEAAAAAAG DAAASETHEP ASCKDTRTTV MIRNIPNKYS QKLLLNMLDN HCILSNQQIE ASCEDEAQPF
501: SSYDFLYLPI DFNNKCNVGY GFVNLTSPEA AVRLYKAFHK QPWEVFNSRK ICQVTYARVQ GLDALKEHFK NSKFPCDSDE YLPVVFSPPR DGKLLTEPVP
601: LVGRSPAPSS ASGASSPPKS CAASVDPLAQ ELMTAPSSSG DGASSASSSN AHADEDDVHG ETGGDRGDDA GLDLELQRLG YTD

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.