CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31364	Soybean	cytosol, nucleus	28.01	87.28
KRH31365	Soybean	nucleus	34.32	56.92
CDY01848	Canola	plastid	41.37	44.42
Solyc05g013930.1.1	Tomato	nucleus	51.58	43.85
CDY56219	Canola	plastid	41.74	42.78
AT1G67770.1	Thale cress	plastid	40.82	41.75
Bra036347.1-P	Field mustard	plastid	41.93	41.54
Bra004255.1-P	Field mustard	plastid	42.3	41.45
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	38.22	40.79
CDX83589	Canola	nucleus	43.97	40.79
CDX99727	Canola	nucleus	44.34	39.64
CDY40990	Canola	nucleus	44.9	39.54
PGSC0003DMT400027957	Potato	nucleus	34.88	38.84
CDY13612	Canola	nucleus	43.78	38.82
AT3G26120.1	Thale cress	nucleus	44.16	38.7
Bra025185.1-P	Field mustard	nucleus	43.6	38.65
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	38.03	35.71
GSMUA_Achr8P32080_001	Banana	nucleus	44.16	34.44
EES01930	Sorghum	nucleus	40.63	32.88
Zm00001d042445_P001	Maize	nucleus	40.26	32.68
TraesCS3B01G447800.1	Wheat	nucleus	40.07	31.95
Os01t0907900-01	Rice	nucleus	40.45	31.92
TraesCS3A01G413400.1	Wheat	nucleus	40.26	31.91
HORVU3Hr1G091930.1	Barley	nucleus	39.89	31.76
TraesCS3D01G407900.1	Wheat	nucleus	40.07	31.63
KRH16604	Soybean	cytosol, nucleus, peroxisome	14.1	27.94
KRH18810	Soybean	cytosol	12.99	26.02
KRH24390	Soybean	nucleus	16.51	25.21
KRH29371	Soybean	nucleus	16.7	24.46
KRH46056	Soybean	nucleus, plastid	28.01	17.64
KRH12823	Soybean	nucleus	27.83	17.4
KRG98918	Soybean	plastid	27.64	17.39
KRH37781	Soybean	nucleus	27.64	17.29
KRH41056	Soybean	nucleus	25.79	14.57
KRH59735	Soybean	nucleus	25.6	14.56
KRH63864	Soybean	nucleus	25.6	14.21
KRH54096	Soybean	nucleus	25.23	14.06
KRH45198	Soybean	nucleus	14.66	10.7

Protein Annotations

EntrezGene:100803603	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02010799	InterPro:EAR1_like_RRM3	EnsemblPlantsGene:GLYMA_18G012600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MYL9	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRG97510	ProteinID:KRG97510	ProteinID:KRG97510.1	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233DFE4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:894667..898150

Molecular Weight (calculated)

60678.1 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.584

Length

539 amino acids

Sequence
(BLAST)

001: MGETGIIVSF QGNLDPRAEE FRPLNLQCQW YPLPLPTPLS TSSTRSLLLT PLPFTSHSAL RAELQAFGDI RALQTDSLRH GILTVHFFDL RHAESAFAAI
101: RSMHLHFPQF LLSAHPISAH YVLPSSNAFP DAHNQGTLVI FNLHPNLSTV QLRRLFQPFG PIKELRDTPW KKNQRFVEFF DIRDAAKALK HMNGKEIHGK
201: QVVIEFSRPG GHTRKFFHHS PPSETTPFNV PPPPPPFPPS PRRRFAAPRL HSSQKKSPGS HKSTGSIDAE MGSMSLTGEV EVQHSSHGPT QRNLSRKHNC
301: DTTVVVGTTT KQQQQQQQQQ QVPRSRHWKG KQAKKQETRF LIKEGAIVES GPKDTRTTVM IKNIPNKYSQ KLLLNMLDNH CRHCNEQIAD GDEQQPLSSY
401: DFVYLPIDFN NKCNVGYGFV NMTSTEATLR LHKAFHLQHW EVFNSRKICE VTYARVQGLE ALKEHFKNSK FPCEMEHYLP VVFSPPRDGK ELTEPLPIVG
501: NKQQQQAISS GGGGSGSVGD DDETNEEVGS SVVILKDSI

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.